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Table 2 Average imputation accuracies computed across pigs or SNPs

From: Empirical determination of breed-of-origin of alleles in three-breed cross pigs

 

Pig

SNP

Concordance

Correlation

Concordance

Landrace

0.99

0.97

0.98

Large White

0.99

0.97

0.98

Synthetic boar

0.98

0.96

0.98

F1 crossbred

0.98

0.97

0.98

  1. Accuracy was computed for the masked loci as the proportion of pigs or loci that had the same observed and imputed genotype (concordance), or the same Pearson correlation between the observed and imputed genotypes
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Genetics Selection Evolution

ISSN: 1297-9686