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Table 3 Allele assignment (%) to purebred lines as breed-of-origin in four scenarios

From: Empirical determination of breed-of-origin of alleles in three-breed cross pigs

Pedigree

fr (%)

Paternal

Maternal

Total

Line S

Line LR

Line LW

Total

Noa

0

49.5 (0.25)

22.4 (0.59)

21.1 (0.38)

43.5 (0.80)

93.0 (1.04)

20

49.6 (0.23)

22.5 (0.64)

21.6 (0.42)

44.1 (0.82)

93.7 (1.03)

Yesa

0

49.7 (0.26)

23.2 (0.48)

21.8 (0.33)

45.0 (0.71)

94.6 (0.97)

20

49.7 (0.25)

23.0 (0.61)

22.6 (0.83)

45.5 (0.67)

95.2 (0.91)

Yesb

0

49.5 (0.46)

22.5 (0.90)

21.8 (0.53)

44.4 (1.13)

93.9 (1.44)

20

49.6 (0.42)

23.0 (0.65)

22.7 (0.59)

45.7 (0.73)

95.2 (0.95)

  1. Allele assignment to synthetic boar (S), Landrace (LR), or Large White (LW) for four scenarios, when pedigree information is used or not, and with a relaxation factor (fr) of 0 or 20 %
  2. SD are in parenthesis
  3. aAverages estimated using chromosomes 3, 4, 9, 12, and 16
  4. bAverages estimated using all 18 autosomes