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Table 4 Comparison between different scenarios for the assignment of breed-of-origin of alleles

From: Empirical determination of breed-of-origin of alleles in three-breed cross pigs

Comparison A

Comparison B

Pedigree

No pedigree

%

fr 20 %

fr 0 %

%

Concordance

94.16

Concordance

99.24

Assigned

Not assigned

3.57

Assigned

Not assigned

0.63

Not assigned

Assigned

1.97

Not assigned

Assigned

0.07

Disagreement

0.30

Disagreement

0.06

  1. (A) Breed-of-origin approach with versus without pedigree (relaxation factor (fr) of 0 %)
  2. (B) Breed-of-origin approach with fr set to 20 % versus fr set to 0 % (with pedigree)
  3. Concordance, same allele assigned to the same breed-of-origin by both scenarios or same allele not assigned to a breed-of-origin by both scenarios
  4. Disagreement, same allele assigned to different breed-of-origins by both scenarios
  5. Allele assigned to a breed-of-origin by only one scenario (assigned–not assigned or not assigned–assigned)
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Genetics Selection Evolution

ISSN: 1297-9686