Table 1 Illumina whole-genome sequence data analyzed for canids
From: Lessons for livestock genomics from genome and transcriptome sequencing in cattle and other mammals
Breed or speciesa | Number of animals | Number of unique reads | Total number of bases | Average raw coverage |
|---|---|---|---|---|
Airedale | 3 | 1,835,972,548 | 189,076,779,986 | 21.73 |
American Cocker Spaniel | 1 | 550,728,624 | 49,677,215,966 | 17.13 |
Australian Cattle Dog | 1 | 711,273,698 | 70,765,609,261 | 24.40 |
Australian Shepherd | 2 | 840,566,934 | 85,850,839,503 | 14.80 |
Basenji | 4 | 2,927,119,952 | 210,417,110,609 | 18.14 |
Beagle | 1 | 780,817,394 | 63,747,724,135 | 21.98 |
Berger Picard | 3 | 2,069,275,590 | 205,948,372,326 | 23.67 |
Black and Tan Coonhound | 1 | 679,891,938 | 67,638,413,640 | 23.32 |
Black Russian Terrier | 1 | 997,183,630 | 99,214,491,903 | 34.21 |
Border Collie | 4 | 2,060,945,654 | 198,204,250,786 | 17.09 |
Border Terrier | 3 | 2,176,208,598 | 216,516,863,418 | 24.89 |
Boxer | 1 | 697,830,122 | 69,426,054,504 | 23.94 |
Brittany Spaniel | 1 | 270,637,588 | 24,978,627,038 | 8.61 |
Cane Corso | 1 | 739,372,554 | 73,535,208,078 | 25.36 |
Cavalier King Charles Spaniel | 1 | 265,927,732 | 28,587,068,953 | 9.86 |
Chinese Crested | 2 | 1,438,761,694 | 146,160,620,792 | 25.20 |
Chinook | 1 | 504,935,430 | 49,629,756,311 | 17.11 |
Clumber Spaniel | 1 | 433,000,560 | 46,550,630,335 | 16.05 |
Doberman Pinscher | 3 | 2,344,622,200 | 238,904,843,602 | 27.51 |
Dogue de Bordeaux | 1 | 170,689,396 | 18,347,702,387 | 6.33 |
English Cocker Spaniel | 2 | 1,281,420,632 | 126,908,789,998 | 21.88 |
English Pointer | 1 | 567,753,520 | 55,967,932,647 | 19.30 |
English Setter | 1 | 634,717,832 | 63,149,492,667 | 21.78 |
English Springer Spaniel | 2 | 1,590,523,446 | 158,194,631,252 | 27.27 |
German Shepherd | 1 | 756,040,450 | 75,156,450,593 | 25.92 |
Golden Retriever | 5 | 4,070,501,036 | 403,283,810,728 | 27.81 |
Gordon Setter | 1 | 817,775,346 | 81,358,201,786 | 28.05 |
Great Dane | 1 | 376,806,522 | 37,839,711,742 | 13.05 |
Great Pyrenees | 1 | 565,784,774 | 49,568,606,807 | 17.09 |
Irish Setter | 1 | 346,307,834 | 34,795,164,362 | 12.00 |
Italian Greyhound | 2 | 1,542,147,642 | 149,486,662,073 | 25.77 |
Jack Russell Terrier | 4 | 3,105,361,266 | 308,784,422,151 | 26.62 |
Kangal | 1 | 684,150,446 | 67,965,611,329 | 23.44 |
Kerry Blue Terrier | 1 | 687,611,948 | 68,389,683,123 | 23.58 |
Kerry Blue Terrier x Beagle | 1 | 651,841,508 | 64,849,405,821 | 22.36 |
Labrador Retriever | 5 | 3,709,095,580 | 353,808,502,687 | 24.40 |
Lowchen | 1 | 715,653,408 | 71,198,644,281 | 24.55 |
Mastiff | 1 | 483,681,504 | 48,119,364,526 | 16.59 |
Minature Schnauzer | 1 | 195,414,668 | 18,621,971,238 | 6.42 |
Newfoundland | 1 | 823,220,602 | 81,614,127,419 | 28.14 |
Norwegian Lundehund | 1 | 811,706,582 | 68,482,430,848 | 23.61 |
Nova Scotia Duck Tolling Retriever | 1 | 596,223,330 | 59,315,213,926 | 20.45 |
Pembroke Welsh Corgi | 3 | 2,051,796,660 | 203,917,418,863 | 23.44 |
Pointer | 1 | 679,321,384 | 67,449,360,020 | 23.26 |
Portuguese Podengo | 1 | 713,936,158 | 70,998,114,063 | 24.48 |
Portuguese Pointer | 1 | 248,203,298 | 26,681,270,396 | 9.20 |
Pug | 5 | 2,181,139,846 | 211,948,096,064 | 14.62 |
Racing Greyhound | 1 | 506,353,446 | 44,692,996,771 | 15.41 |
Rhodesian Ridgeback | 1 | 675,657,188 | 57,628,159,808 | 19.87 |
Rottweiler | 2 | 1,725,459,344 | 171,619,235,087 | 29.59 |
Saint Bernard | 1 | 686,645,884 | 68,287,808,505 | 23.55 |
Saluki | 1 | 511,267,106 | 54,961,103,147 | 18.95 |
Scottish Deerhound | 1 | 621,980,494 | 61,860,209,481 | 21.33 |
Scottish Terrier | 2 | 1,885,266,610 | 187,558,882,079 | 32.34 |
Shetland Sheepdog | 2 | 1,234,686,882 | 136,146,946,574 | 23.47 |
Shiba Inu | 1 | 630,025,762 | 62,680,763,830 | 21.61 |
Soft Coated Wheaten Terrier | 4 | 2,032,830,308 | 202,332,623,664 | 17.44 |
Standard Poodle | 4 | 2,327,588,144 | 228,963,620,584 | 19.74 |
Standard Schnauzer | 1 | 747,864,414 | 74,406,225,393 | 25.66 |
Tibetan Terrier | 2 | 1,269,955,028 | 126,330,578,452 | 21.78 |
West Highland White Terrier | 5 | 4,316,424,718 | 430,004,352,287 | 29.66 |
Canis aureus (Jackal) | 3 | 8,351,392,646 | 830,865,082,100 | 30.48 |
Canis dingo (Dingo) | 1 | 3,042,961,175 | 302,630,047,893 | 50.02 |
Canis latrans (Coyote) | 2 | 9,521,271,994 | 942,508,023,731 | 17.25 |
Canis lupus (Wolf) | 15 | 96,911,894,312 | 8,634,051,009,336 | 23.80 |