Table 2 Significant SNPs identified for traits in Jarso chickens

IBDV

Affx-51021753* ^,a,b

20 (13729523)

2.82E−08

0.052 (4E−05)

−0.032 (0.03)

0.04*

0.96

Affx-50919107 ^a

2 (40486311)

7.04E−07

0.020 (0.04)

0.004 (0.15)

0.07*

0.93

Affx-51897552 ^a

Z (2805087)

1.20E−06

−0.005 (0.05)

−0.004 (0.28)

0.24

0.76*

Affx-51897506

Z (28519476)

3.12E−06

−0.007 (0.09)

−0.000 (0.39)

0.18

0.82*

MDV

Affx-50554286* ^,a

11 (8097578)

5.08E−08

0.028 (2E−05)

−0.006 (0.31)

0.14*

0.86

Affx-50554294* ^,a,b

11 (8102461)

7.89E−08

0.025 (4E−06)

−0.005 (0.28)

0.26*

0.74

Affx-50554208 ^a

11 (8066972)

3.05E−07

0.022 (0.01)

−0.000 (0.39)

0.17*

0.83

Affx-50613892^a,b

13 (14006092)

5.00E−06

0.004 (0.37)

0.032 (0.037)

0.09*

0.92

SG

Affx-50739265 ^a

17 (9157484)

1.21E−06

−0.151 (1E−03)

−0.013 (0.38)

0.09

0.91*

Affx-50739250 ^a

17 (9151381)

2.21E−06

−0.134 (3E−03)

−0.025 (0.35)

0.10

0.90*

Affx-51614950^a

5 (6690649)

2.99E−06

0.078 (1E−05)

0.018 (0.31)

0.40*

0.60

PM

Affx-50315740 ^a,b

1 (194369733)

3.02E−07

−0.343 (5E−06)

0.219 (0.00)

0.07

0.93*

Affx-51210522 ^a,b

3 (13285408)

8.75E−07

−0.611 (3E−05)

0.371 (0.02)

0.03

0.97*

Affx-50856253 ^a,b

2 (135976613)

1.23E−06

−0.323 (1E−05)

0.181 (0.03)

0.07

0.93*

Affx-51091424^a,b

23 (3294718)

2.63E−06

−0.278 (1E−08)

0.240 (0.01)

0.08

0.92*

Affx-51891828^a

Z (22361089)

5.89E−06

−0.199 (3E−03)

0.012 (0.39)

0.04

0.96*

Eimeria

Affx-51295947 ^a

3 (60276817)

2.26E−07

0.376 (0.03)

0.043 (0.24)

0.07

0.93*

Affx-51295976 ^a

3 (60299318)

8.09E−07

0.342 (0.03)

0.032 (0.25)

0.10

0.90*

Affx-50757437 ^a

18 (5763355)

5.30E−07

0.422 (3E−03)

0.016 (0.39)

0.14

0.86*

Affx-50757438 ^a

18 (5763659)

2.61E−06

0.426 (4E−04)

−0.058 (0.36)

0.12

0.88*

Affx-51550767 ^a

5 (28051272)

9.20E−07

0.654 (9E−05)

0.038 (0.19)

0.07

0.93*

Affx-50711670^a

16 (146715)

1.00E−05

−0.416 (2E−03)

0.095 (0.09)

0.13*

0.87

Cestodes

Affx-51718143* ^,a,b

7 (21664924)

1.80E−11

0.445 (3E−10)

−0.252 (3E−03)

0.04

0.96*

Affx-50667122* ^,a,b

14 (5803456)

1.06E−08

0.273 (9E−09)

−0.202 (0.03)

0.92*

0.08

Affx-50796263* ^,a,b

19 (9284997)

1.56E−08

0.426 (2E−17)

−0.411 (2E−05)

0.92*

0.08

Affx-50805630* ^,a,b

2 (104948558)

1.24E−07

0.306 (2E−05)

−0.151 (0.09)

0.96*

0.04

Affx-50417651 ^a,b

1 (7326327)

1.39E−07

−0.043 (0.02)

−0.153 (3E−03)

0.90*

0.10

Affx-50350190 ^a,b

1 (37252069)

1.71E−07

0.445 (3E−10)

−0.252 (3E−03)

0.96*

0.04

Affx-51792456 ^a

8 (22438049)

6.77E−07

0.123 (6E−06)

−0.051 (0.12)

0.76*

0.24

Affx-51792501 ^a

8 (22456586)

1.05E−06

0.123 (5E−06)

−0.052 (0.08)

0.77*

0.23

Affx-51792503 ^a,b

8 (22457826)

1.21E−06

0.114 (5E−07)

−0.058 (0.05)

0.70*

0.30

Affx-51875683 ^a,b

9 (8596899)

1.25E−06

0.152 (1E−07)

−0.114 (1E−03)

0.75*

0.25

Affx-51474665 ^a

4 (72218113)

1.32E−06

−0.259 (6E−07)

NA

0.96*

0.04

Affx-51675956 ^a

6 (34224060)

2.17E−06

0.118 (8E−05)

−0.035 (0.26)

0.83*

0.17

Affx-51894886^a,b

Affx-50712683^a

Z (24758394)

16 (80940)

3.40E−06

1.09E−04

0.686 (3E−15)

0.134 (0.02)

−0.670 (3E−11)

0.031 (0.39)

0.97*

0.87*

0.03

0.13

Bodyweigh

Affx-51502208* ^,a,b

4 (87162290)

1.75E−13

0.051 (4E−13)

−0.018 (0.04)

0.30*

0.70

Affx-51502179* ^,a

Affx-51502172* ^,a,b

Affx-51502191* ^,a,b

Affx-51502955* ^,a,b

Affx-51502405* ^,a,b

Affx-51501548* ^,a,b

Affx-51501414* ^,a,b

Affx-51502756* ^,a,b

Affx-51502383* ^,a,b

Affx-51501235* ^,a

Affx-51502311* ^,a

Affx-51501231* ^,a

Affx-51502367* ^,a

Affx-51502246* ^a

Affx-51500484* ^,a

Affx-51502298* ^,a

Affx-51502304* ^,a

Affx-51501571* ^,a,b

Affx-51501208* ^,a

4 (87149557)

4 (87146841)

4 (87154473)

4 (87546243)

4 (87266160)

4 (86818215)

4 (784066)

4 (87449896)

4 (87254896)

4 (86663849)

4 (87215318)

4 (86662441)

4 (87244290)

4 (87182268)

4 (86290949)

4 (87208267)

4 (87211838)

4 (86830246)

4 (783086)

4.56E−12

5.22E−12

1.64E−11

1.88E−09

3.23E−09

5.15E−09

6.88E−09

7.28E−09

2.16E−08

2.32E−08

3.44E−08

3.60E−08

3.86E−08

4.02E−08

4.21E−08

6.33E−08

6.33E−08

6.92E−08

6.98E−08

0.057 (5E−10)

0.051 (4E−13)

0.060 (6E−10)

0.033 (0.004)

0.047 (2E−09)

0.049(5E−09)

0.050 (4E−09)

0.027 (0.002)

0.046(4E−09)

0.060 (9E−07)

0.045 (6E−09)

0.062 (1E−07)

0.039 (2E−07)

0.045 (1E−07)

0.056 (2E−06)

0.056 (2E−06)

0.045 (7E−07)

0.042 (2E−09)

0.042 (4E−05)

−0.012 (0.19)

−0.018 (0.04)

−0.018 (0.09)

−0.076

(4E−09)

−0.018 (0.05)

−0.026 (0.02)

−0.027 (0.01)

−0.059 (3E−08)

−0.027 (8E−03)

−0.022 (0.11)

−0.025 (0.01)

−0.027 (0.05)

−0.007 (0.29)

−0.020 (0.07)

−0.014 (0.17)

−0.017 (0.17)

−0.016 (0.12)

−0.025 (5E−03)

−0.008 (0.31)

0.22*

0.20*

0.22*

0.13*

0.27*

0.23*

0.24*

0.20*

0.13*

0.26*

0.12*

0.27*

0.13*

0.29*

0.20*

0.13*

0.13*

0.22*

0.30*

0.78

0.80

0.78

0.87

0.73

0.77

0.76

0.80

0.87

0.74

0.88

0.73

0.87

0.71

0.80

0.87

0.87

0.78

0.70

BCS

Affx-50734945 ^a

17 (7814709)

3.53–07

0.290 (6E−05)

−0.012 (0.39)

0.86

0.14*

Affx-51773927^a

8 (14332889)

2.73E−06

0.195 (6E−05)

0.003 (0.39)

0.68

0.32*

Affx-51160997^a,b

27 (3533019)

2.86E−06

0.923 (0.001)

−0.599 (0.03)

0.92

0.08*