Trait | SNP | Location Chr (bp) | GWAS P-value | Additive effect (P-value) | Dominance effect (P-value) | Phenotypic variance (%) | p | q |
---|---|---|---|---|---|---|---|---|
IBDV | Affx-5Affx-51526157* ,a | 5 (15315358) | 2.55E−08 | 0.033 (0.05) | 0.035 (0.09) | 2 | 0.03* | 0.97 |
 | AfAffx-51242536* ,a | 3 (3148207) | 1.96E−07 | 0.033 (0.01) | −0.014 (0.14) | 10 | 0.12* | 0.88 |
 | Affx-50862142 a,b | 2 (139341263) | 5.47E−07 | 0.065 (8E−05) | −0.041 (0.02) | 21 | 0.07* | 0.93 |
 | Affx-51878048 a,b | 9 (866678) | 1.68E−06 | 0.0270.04) | 0.034 (0.05) | 2 | 0.07* | 0.93 |
 | Affx-51183095 a,b | 28 (581149) | 8.47E−07 | −0.025 (0.04) | 0.117 (0.01) | 2 | 0.03 | 0.97* |
 | Affx-50756295 b | 18 (5404597) | 1.25E−06 | −0.003 (0.37) | 0.032 (0.00) | 7 | 0.13 | 0.87* |
 | Affx-51884018 a | Z (15058127) | 2.31E−06 | 0.043 (6E−0.4) | −0.025 (0.07) | 12 | 0.08* | 0.92 |
 | Affx-51084536a,b | 23 (1467133) | 2.72E−06 | 0.072 (0.002) | −0.048 (0.05) | 18 | 0.04* | 0.96 |
 | Affx-50584797a,b | 12 (19824359) | 3.88E−06 | 0.025 (0.027) | 0.000 (0.39) | 4 | 0.09* | 0.91 |
MDV | Affx-51262165 a | 3 (42096244) | 1.05E−06 | −0.180 (8E−04) | −0.020 (0.37) | 5 | 0.27 | 0.63* |
 | Affx-50589622a | 12 (3932659) | 3.34E−06 | −0.144 (5E−05) | 0.059 (0.22) | 5 | 0.35 | 0.65* |
 | Affx-50758514a | 18 (6099330) | 7.22E−06 | 0.383 (5E−05) | NA | 10 | 0.10 | 0.90* |
SG | Affx-50376191 b | 1 (51661206) | 4.35E−07 | –0.041 (0.39) | 0.380 (0.03) | 2 | 0.05 | 0.95* |
 | Affx-51254552 | 3 (38112387) | 1.33E−06 | −0.032 (0.06) | 0.025 (0.09) | 2 | 0.31 | 0.69* |
 | Affx-50583084 Affx-50712674a | 12 (19159478) 16 (78709) | 3.55E−06 1.20E−04 | 0.100 (0.08) 0.197 (0.02) | −0.080 (0.14) −0.000 (0.39) | 4 5 | 0.12* 0.10* | 0.88 0.90 |
PM | Affx-51540438 a | 5 (22760016) | 2.31E−06 | 0.081 (9E−04) | 0.025 (0.29) | 4 | 0.42* | 0.58 |
 | Affx-50463812a | 10 (10377622) | 2.76E−06 | 0.095 (0.01) | 0.012 (0.39) | 10 | 0.20* | 0.80 |
 | Affx-50463814a | 10 (10378046) | 3.19E−06 | 0.08 (0.03) | 0.017 (0.38) | 9 | 0.22* | 0.78 |
 | Affx-50463818a | 10 (10379061) | 3.19E−06 | 0.08 (0.03) | 0.017 (0.38) | 9 | 0.22* | 0.78 |
Cestodes | Affx-51266852* ,a,b | 3 (44583022) | 4.03E−08 | 0.289 (7E−06) | −0.146 (0.03) | 11 | 0.15 | 0.85* |
 | Affx-50313244 a,b | 1 (193416334) | 6.93E−07 | 0.131 (1E−06) | −0.051 (0.15) | 7 | 0.30 | 0.70* |
 | Affx-50311899 a,b | 1 (18927296) | 1.12E−06 | 0.165 (9E−07) | −0.096 (0.02) | 10 | 0.23 | 0.77* |
 | Affx-51085176 a | 23 (1631142) | 6.27E−06 | 0.339 (2E−04) | −0.180 (0.12) | 4 | 0.07* | 0.93 |
Body weight | Affx-51856375 a | 9 (22119113) | 6.87E−07 | −0.044 (0.04) | −0.016 (0.32) | 5 | 0.07 | 0.93* |
 | Affx-50919051 a | 2 (40447782) | 7.96E−07 | −0.041 (1E−06) | 0.016 (0.11) | 16 | 0.27 | 0.73* |
 | Affx-51500100a | 4 (86100031) | 6.26E−06 | −0.027 (1E−04) | 9E−05 (0.24) | 7 | 0.62 | 0.38* |
 | Affx-50595206a | 12 (6188503) | 8.96E−06 | 0.040 (0.03) | −0.008 (0.32) | 10 | 0.19* | 0.81 |
BCS | AfAf fx-51794123* ,a, | 8(23157421) | 6.28E−08 | −0.224 (2E−07) | 0.011 (0.39) | 7 | 0.57 | 0.43* |
 | Affx-51794141* ,a | 8 (23164238) | 6.28E−08 | −0.224 (2E−07) | 0.011 (0.39) | 7 | 0.57 | 0.43* |
 | Affx-51794116 a | 8 (23154277) | 2.08E−06 | −0.193 (2E−05) | 0.050 (0.24) | 5 | 0.38 | 0.62* |
 | Affx-50709156a | 15 (8941550) | 8.85E−06 | 0.286 (7E−03) | 0.057 (0.39) | 5 | 0.13* | 0.87 |