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Table 1 Results from association analyses for the SNPs on BTA6 from the Illumina BovineHD BeadChip

From: Fine mapping of a QTL on bovine chromosome 6 using imputed full sequence data suggests a key role for the group-specific component (GC) gene in clinical mastitis and milk production

Traita SNP bp −log(p) Frequency Effect SE A1 A2
CM1 rs110300280 88,744,593 18.1 0.37 0.007 0.0008 A G
CM4 rs110300280 88,744,593 11.9 0.37 0.006 0.0008 A G
CM6 rs109066341 88,890,502 11.5 0.41 0.007 0.001 G A
kg milk rs110300280 88,744,593 11.4 0.37 46.07 6.619 A G
kg protein rs134055603 88,832,335 17.7 0.42 1.65 0.187 A G
kg fat rs110679276 88,750,266 9.6 0.38 1.70 0.2669 A G
  1. For each trait, the most significant SNP for the QTL that was detected close to the GC gene is shown with its position in base pairs (bp), negative logarithm of the p value [−log(p)], minor allele frequency (Freq), allele substitution effect for the first allele of the SNP (Effect), standard error of the SNP effect (SE), and alleles
  2. aCM1, CM4 and CM6: clinical mastitis in the period from −15 to 30 days postpartum in the first, second and third lactations, respectively. Performance data for kg milk, kg protein and kg fat refers to 305 d lactation yields