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Table 4 Distribution of LoF and deleterious variants

From: Construction of a large collection of small genome variations in French dairy and beef breeds using whole-genome sequences

  Stop lost Splice acceptor Start lost Frameshift Missense deleterious Stop gained Splice donor
Holstein 1 15 10 0 1 5 18
Abondance 1 0 1 0 43 1 0
Cross-breed 0 0 0 1 10 1 0
Brown Swiss 0 6 1 0 4 3 3
Salers 0 1 0 0 47 1 2
Montbéliarde 1 1 3 0 705 34 18
Vosgienne 0 4 0 0 4 9 3
Normande 0 11 3 0 626 1 1
Simmental 0 2 0 0 33 3 1
Limousine 0 11 1 0 18 1 14
Charolaise 1 15 6 5 17 35 21
Parthenaise 0 0 0 0 1 9 2
Rouge des Prés 1 1 0 0 37 3 1
Tarentaise 0 1 0 0 54 0 0
Blonde d’Aquitaine 2 13 3 1 572 31 16
Aubrac 0 8 1 0 193 10 2
  1. This table summarizes the distribution of LoF and deleterious variants in each breed and for each functional annotation class