From: Detection and validation of structural variations in bovine whole-genome sequence data
Simulation set | HOM | HET | Base error rate | Repetitive | SNP% in SV | Mix |
---|---|---|---|---|---|---|
HOM/HET | HOM | HET | HOM | HOM | HOM | HET |
SNP% in SV | 0 | 0 | 0 | 0 | 0.01–0.25 | 0.01 |
REP region | 0 | 0 | 0 | 100% | 0 | 50% |
Number of SV | 100 × 3 | 100 × 3 | 100 × 3 | 100 × 3 | 100 × 3 | 100 × 3 |
Insert size | 500 | 500 | 500 | 500 | 500 | 500 |
SD of insert size | 50 | 50 | 50 | 50 | 50 | 50 |
Base error rate | 0.01 | 0.01 | 0.001–0.025 | 0.01 | 0.01 | 0.01 |
SNP rate | 0.01 | 0.01 | 0.01 | 0.01 | 0.01 | 0.008 |
Indel rate | 0.01 | 0.01 | 0.01 | 0.01 | 0.01 | 0.01 |