Table 3 Number and length of genome regions covered by SV detected in the Holstein and Jersey sets by Breakdancer and Pindel
From: Detection and validation of structural variations in bovine whole-genome sequence data
RAW_SV_output | SV counts | SV covered region (Mb) | ||||||
|---|---|---|---|---|---|---|---|---|
SV Set | DEL | INS | INV | DUP | DEL | INS | INV | DUP |
POP_HOL_Breakdancer | 2,124,795 | 2,047,019 | 46,975 | 28,745 | 116.97 | 115.47 | 118.82 | 15.69 |
POP_HOL_Pindel | 51,302 | 85,946 | 457,575 | 21,888 | 144.96 | 6.35 | 269.69 | 84.86 |
POP_JER_Breakdancer | 412,830 | 498,257 | 4397 | 4502 | 31.56 | 32.77 | 13.30 | 7.98 |
POP_JER_Pindel | 37,717 | 47,234 | 63,683 | 20,889 | 46.58 | 3.38 | 62.28 | 27.53 |