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Table 4 Number and length of genome regions covered by SV detected in the Holstein and Jersey sets and the three validated sets, and in the overlapped set between Holstein and Jersey

From: Detection and validation of structural variations in bovine whole-genome sequence data

Final SV output set

SV counts

SV covered region (Mb)

SV Set

DEL

INS

INV

DUP

DEL

INS

INV

DUP

POP_HOL

4037

7679

3623

2179

8.4889

0.6334

13.8377

4.3995

POP_JER

2679

0*

415

1191

5.2239

0.0000*

1.0497

2.3675

Overlap between POP_HOL and POP_JER

1533

0

69

601

3.1790

0.0000

0.2188

1.2270

TWICE_SEQ

10,893

174

200

267

4.8495

0.0077

0.3882

0.3934

FAM_HOL

4230

24

106

258

2.9639

0.0012

0.2057

0.3173

FAM_JER

619

0*

17

58

0.5944

0.0000*

0.0240

0.0466

Overlap between FAM_HOL and FAM_JER

509

0

14

27

0.4704

0.0000

0.0185

0.0225

  1. * No insertions were found for the Jersey population