Detection and validation of structural variations in bovine whole-genome sequence data

Table 8 Expanded gene families in the bovine genome with structural variations

Gene	Chr	Start bp	End bp	SV type	SV sets
DEFB122*	Chr13	61,561,981	61,578,126	DEL	POP_HOL;TWICE_SEQ;POP_JER
DEFB122	Chr13	61,561,981	61,578,126	INS	POP_HOL
DEFB122A	Chr13	61,562,053	61,566,096	DEL	POP_HOL;POP_JER
DEFB122A	Chr13	61,562,053	61,566,096	INS	POP_HOL
DEFB125	Chr13	61,371,090	61,377,521	INV	POP_HOL
DEFB125A	Chr13	61,391,541	61,402,435	INV	POP_HOL
DEFB112	Chr23	22,381,986	22,387,950	DEL	TWICE_SEQ
DEFB	Chr27	5,457,175	5,465,032	INS	POP_HOL
DEFB1	Chr27	5,483,406	5,539,158	INS	POP_HOL
DEFB1	Chr27	5,448,917	5,465,074	INS	POP_HOL
DEFB1*	Chr27	6,223,483	6,225,131	DEL	FAM_HOL;TWICE_SEQ;POP_JER
DEFB52	Chr27	5,134,073	5,276,254	DUP	POP_JER
DEFB52	Chr27	5,134,073	5,276,254	INS	POP_HOL
DEFB52	Chr27	5,134,073	5,276,254	DEL	POP_JER
DEFB33	Chr27	5,245,806	5,351,104	INS	POP_HOL
CATHL2*	Chr22	52,189,557	52,191,061	DEL	POP_HOL;POP_JER
PAG16	Chr29	38,952,100	39,189,606	DEL	TWICE_SEQ
PAG16	Chr29	38,952,100	39,189,606	INS	POP_HOL
PAG16	Chr29	38,952,100	39,189,606	INV	POP_HOL
PAG18	Chr29	38,428,102	38,437,106	DEL	TWICE_SEQ
LOC751562	Chr23	34,386,963	34,491,996	DEL	FAM_HOL;POP_HOL;TWICE_SEQ
LOC751562	Chr23	34,386,963	34,491,996	DUP	POP_HOL;POP_JER
PRP6	Chr23	34,479,662	34,491,996	DEL	POP_HOL;TWICE_SEQ

ISSN: 1297-9686