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Table 4 Genes located in one of the FPDmeta clusters (Table 2) that were significantly differentially-expressed (nominal p value ≤ 0.0001) in the HFP and LFP lines

From: A genome-wide association study in a large F2-cross of laying hens reveals novel genomic regions associated with feather pecking and aggressive pecking behavior

ProbeSetIDa

Chrb

Position (Mb)b

FPDmeta cluster

−log10 p

Gene symbol

Gene name

Nfold

Reg

A_87_P022983

3

104.30

4

4.58

WDR35

WD repeat domain 35

7.80

Up

A_87_P021624

3

104.33

4

5.85

LAPTM4A

lysosomal protein transmembrane 4 alpha

1.28

Down

A_87_P018137

3

104.80

4

5.23

HS1BP3

HCLS1 binding protein 3

2.53

Up

A_87_P254443

3

104.84

4

4.28

LDAH

lipid droplet associated hydrolase

1.34

Up

A_87_P176188

3

105.39

4

4.16

LOC769627

Unknownc

1.94

Down

A_87_P304288

8

3.73

7

5.64

LOC101751271

1-phosphatidylinositol phosphodiesterase-like

1.88

Down

A_87_P052241

8

4.03

7

4.01

MTA1

metastasis associated 1

1.19

Down

A_87_P079496

8

25.66

8

4.58

GLIS1

GLIS family zinc finger 1

2.02

Down

A_87_P016336

8

26.00

8

4.10

TTC4

tetratricopeptide repeat domain 4

1.37

Down

A_87_P022335

8

26.00

8

4.35

PARS2

prolyl-tRNA synthetase 2, mitochondrial (putative)

1.36

Up

A_87_P139413

9

5.67

9

4.17

AQP12

aquaporin 12

1.78

Up

A_87_P012759

9

5.67

9

6.92

AQP12

aquaporin 12

1.67

Up

A_87_P077026

9

5.68

9

4.09

PAK2

p21(RAC1)activated kinase 2

1.96

Up

A_87_P280878

9

5.69

9

7.95

PAK2

p21(RAC1)activated kinase 2

1.81

Up

A_87_P285338

9

5.76

9

5.38

RNF168

ring finger protein 168

1.27

Down

A_87_P017768

9

5.98

9

4.12

PPP1R7

protein phosphatase 1, regulatory (inhibitor) subunit 7

1.21

Down

A_87_P223178

9

5.98

9

4.05

PPP1R7

protein phosphatase 1, regulatory (inhibitor) subunit 7

1.28

Down

A_87_P023784

9

6.18

9

6.00

ETV5

ets variant 5

1.40

Down

A_87_P077621

9

16.69

10

4.17

SLC12A9

solute carrier family 12 (potassium/chloride transporters), member 9

1.51

Down

A_87_P005339

9

16.78

10

6.92

CYP2J6L1

cytochrome P450 2J6-like 1

2.24

Up

A_87_P177293

9

16.78

10

4.09

CYP2J6L1

cytochrome P450 2J6-like 1

1.97

Up

A_87_P077646

9

16.79

10

7.95

CYP2J2L5

cytochrome P450 2J2-like 5

2.25

Up

A_87_P181713

19

6.94

12

4.07

FAM101B

family with sequence similarity 101 member B

2.17

Down

A_87_P017169

19

7.26

12

4.86

PTRH2

peptidyl-tRNA hydrolase 2

1.16

Down

A_87_P011731

19

8.05

12

7.95

CA4

carbonic anhydrase IV

1.74

Down

A_87_P018194

24

25.84

13

4.19

VPS26B

VPS26 retromer complex component B

3.85

Up

  1. The experiment-wide significant genes (Bonferroni corrected, p ≤ 0.05) are written in underline
  2. Italic: Gene symbols
  3. aUnique Agilent ID for the 60mer probe on the Agilent Chicken Gene Expression Microarrays
  4. bChromosomal assignment and position according to genome release galGal2.1
  5. cRecording was discontinued and the probe set could not be assigned to any gene