Table 2 Haplotype analyses
Block | Hap number | Haplotype | Effect | Freq | p value |
|---|---|---|---|---|---|
1 | 1.1 | GAACA | + | 0.56 | 0.00037 |
1.2 | AGGCG | − | 0.18 | 0.0000048 | |
1.4 | AGGAG | − | 0.19 | 0.027 | |
2 | 2.1 | GAACAAAGAAG | + | 0.56 | 0.00037 |
2.4 | AGGCGAGGCGA | − | 0.12 | 0.038 | |
2.6 | AGGAGAGGCGA | − | 0.09 | 0.09 | |
2.2 | AGGCGAAGAAG | − | 0.05 | 0.000000059 | |
2.5 | AGGAGAGACGA | − | 0.05 | 0.017 | |
3 | 3.1 | GACGGGGAC | + | 0.62 | 0.125 |
3.3 | AAAGACGGA | − | 0.12 | 0.043 | |
3.5 | AAAAACGGA | − | 0.08 | 0.032 | |
3.4 | AGAGACAGA | − | 0.06 | 0.08 | |
4 | 4.1 | GAACAAAGAAGGACAAGACGGGGACGGC | + | 0.56 | 0.00046 |
4.4 | AGGCGAGGCGAGTCAAAAAGACGGAAAA | − | 0.12 | 0.043 | |
4.6 | AGGAGAGGCGAGTCGGAAAAACGGAAAA | − | 0.08 | 0.034 | |
4.2 | AGGCGAAGAAGGACAAGACGGGGACGGC | − | 0.05 | 0.000000059 |