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Table 1 Number of polymorphic sites in Fleckvieh and Holstein cattle

From: Evaluation of the accuracy of imputed sequence variant genotypes and their utility for causal variant detection in cattle

Chr

Chr length (Mb)

Fleckvieh

Holstein

SEQ (MAF < 0.1)

700 K (MAF < 0.1)

SEQ (MAF < 0.1)

700 K (MAF < 0.1)

1

158.32

1,444,299 (60.55)

38,009 (18.40)

1,382,987 (59.11)

37,397 (17.01)

5

121.18

1,098,976 (59.64)

28,173 (18.55)

1,073,964 (59.12)

27,667 (15.90)

10

104.30

959,206 (59.13)

25,787 (17.09)

917,799 (59.48)

25,497 (16.12)

15

85.27

866,151 (58.54)

20,617 (17.24)

827,526 (58.12)

20,360 (14.38)

20

71.98

679,738 (59.94)

18,466 (18.18)

649,768 (59.18)

18,264 (18.13)

25

42.85

413,371 (59.08)

11,370 (14.69)

383,072 (58.14)

11,179 (14.27)

  1. Number of sequence (SEQ) and array-derived (Illumina bovineHD, 700 K) variants that were polymorphic in 249 Fleckvieh and 450 Holstein animals. The proportion of variants with a minor allele frequency (MAF) lower than 10% is given in parentheses