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Table 1 Reliabilities for five simulated traits from ten sources of genetic information

From: Selecting sequence variants to improve genomic predictions for dairy cattle

Trait

Parent average

60 k

60 k + 24 kGWA

60 k + 24 kES

60 k + 24 kEV

60 k + 24 kG

60 k + 10 k QTL

Only 10 k QTL

600 k

1.1 m genic

1

24.4

77.9

79.2

81.6

81.3

85.4

84.6

87.2

80.3

86.7

2

31.2

77.9

79.3

81.4

81.2

85.3

84.9

87.7

80.1

86.7

3

32.7

78.3

79.5

81.7

81.5

84.9

85.0

87.8

80.4

86.1

4

23.3

76.6

77.7

80.2

79.8

83.5

82.9

85.9

78.6

84.8

5

30.4

78.3

80.0

82.5

82.2

86.0

85.2

87.5

81.2

87.6

Average

28.4

77.8

79.2

81.5

81.2

85.0

84.5

87.2

80.1

86.4

  1. Reliabilities expressed as percentages; 24 k markers selected from 600 k SNPs by GWA p value, multiple regression effect size (ES) or effect variance (EV); 24 k markers selected from sequence SNPs in or near genes (G) by effect size; 600 k markers plus 500 k SNPs in or near genes (1.1 m genic) by effect size