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Table 3 Edits applied to simulated data and real data from Test 3

From: Selecting sequence variants to improve genomic predictions for dairy cattle

SNP edit Simulated data Real data
Original number of SNPs called 30 million 39 million
Removed for MAF of <0.01 3 million 20 million
Removed for linkage of >0.95 18 million 13 million
Removed for imputation inaccuracy 0 3 million
Remained after edits 8 million 3 million
  1. Test 3 included candidate SNPs, InDels, and intergenic and intronic variants