Table 3 Edits applied to simulated data and real data from Test 3
From: Selecting sequence variants to improve genomic predictions for dairy cattle
SNP edit | Simulated data | Real data |
|---|---|---|
Original number of SNPs called | 30 million | 39 million |
Removed for MAF of <0.01 | 3 million | 20 million |
Removed for linkage of >0.95 | 18 million | 13 million |
Removed for imputation inaccuracy | 0 | 3 million |
Remained after edits | 8 million | 3 million |