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Table 2 Input values for the simulations

From: A model to estimate effects of SNPs on host susceptibility and infectivity for an endemic infectious disease

Variable

Scenario 1

Scenario 2

SNP effect

Recording interval

Group size

100

100

Trans. rate par. ref. type (c)a

0.8–0.145

0.6

Recovery rate (α)

0.0476

0.0476

Average infectious period (1/α) [days]

21

21

Value susceptibility allele g (γ g )

1

1

Value susceptibility allele G (γ G )

0.3–1

0.4

Value infectivity allele f (\(\varphi_{f}\))

1

1

Value infectivity allele F (\(\varphi_{F}\))

0.3–1

0.4

Frequency allele g (p g )

Beta (0.5, 0.05)

Beta (0.5, 0.05)

Frequency allele f (p f )

Beta (0.5, 0.05)

Beta (0.5, 0.05)

Basic reproduction ratio (R 0)

3.0

3.0

Endemic reproduction ratio (R)b

2.1–3.0

2.4

Recording interval (% of 1/α) [%]

66.6

4.8–133.3

Recording frequency

11 times (10 intervals)

11 times (10 intervals)

  1. aTransmission rate parameter for the reference genotype ggff
  2. bDetails on the calculation of the endemic reproduction ratio are in the “Appendix