Table 3 Regions containing putative lethal recessive haplotypes with an effect on total number born using the S × MGS model
From: Use of haplotypes to identify regions harbouring lethal recessive variants in pigs
Region | Step 1A | Step 1C | Step 2, S × MGS model | |||
|---|---|---|---|---|---|---|
\(P (O[ H ] = 0 | E[ H ])\) | \(P (O[ H ] = 0 | S,MGS\;Carriers)\) | P value of MS | \(R\) | Number of SE from the expectation of a lethal recessive effect | Number of SE from no effect | |
1.1 | 2.15 × 10 −3 | 3.37 × 10 −1 | 6.99 × 10 −5 | 0.092 | 1.39 | 3.95 |
1.2 | 1.17 × 10−3 | 2.89 × 10−1 | 7.11 × 10−3 | 0.070 | 2.13‡ | 2.68 |
1.1 and 1.2 †|  |  | 2.07 × 10 −4 | 0.122 | 0.09 | 3.68 |
6.1 | 7.84 × 10−4 | 4.61 × 10−1 | 3.25 × 10−3 | 0.103 | 0.62 | 2.93 |
10.1 | 5.30 × 10−3 | 4.74 × 10−6 | 7.69 × 10−3 | 0.083 | 1.37 | 2.65 |
14.1 | 1.77 × 10 −3 | 8.67 × 10 −3 | 6.28 × 10 −10 | 0.101 | 1.45 | 6.04 |
14.2 | 1.50 × 10 −2 | 1.93 × 10 −2 | 1.01 × 10 −5 | 0.084 | 2.11 ‡ | 4.36 |
14.1 and 14.2 †|  |  | 2.97 × 10 −6 | 0.097 | 1.33 | 4.59 |