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Table 1 Parameters for the analysis of scenarios

From: Incorporation of causative quantitative trait nucleotides in single-step GBLUP

Scenario

60 k SNPs

Causative QTN

Weights GWAS

Causative variances

(a)

Yes

   

(b)

Yes

Yes

  

(c)

Yes

Yes

Yes

 

(d)

Yes

Yes

 

Yes

(e)

 

Yes

  

(f)

Yes

Top 10%

  

(g)

Yes

Top 10%

Yes

 

(h)

Yes

Top 10%

 

Yes

(i)

 

Yes

 

Yes

  1. ‘60 k SNPs’ defines scenarios that included the simulated SNPs
  2. ‘Causative QTN’ defines scenarios that included all or the top 10% simulated causative variants
  3. ‘Weight GWAS’ defines scenarios that used weights from the iterative GWAS approach
  4. ‘Causative variance’ defines scenarios that used true simulated variance for QTL
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Genetics Selection Evolution

ISSN: 1297-9686