TY - JOUR AU - Schopen, G. C. AU - Heck, J. M. AU - Bovenhuis, H. AU - Visker, M. H. AU - Valenberg, H. J. AU - Arendonk, J. A. PY - 2009 DA - 2009// TI - Genetic parameters for major milk proteins in Dutch Holstein-Friesians JO - J Dairy Sci VL - 92 UR - https://doi.org/10.3168/jds.2008-1281 DO - 10.3168/jds.2008-1281 ID - Schopen2009 ER - TY - JOUR AU - Bonfatti, V. AU - Cecchinato, A. AU - Gallo, L. AU - Blasco, A. AU - Carnier, P. PY - 2011 DA - 2011// TI - Genetic analysis of detailed milk protein composition and coagulation properties in Simmental cattle JO - J Dairy Sci VL - 94 UR - https://doi.org/10.3168/jds.2011-4297 DO - 10.3168/jds.2011-4297 ID - Bonfatti2011 ER - TY - JOUR AU - Gebreyesus, G. AU - Lund, M. S. AU - Janss, L. AU - Poulsen, N. A. AU - Larsen, L. B. AU - Bovenhuis, H. PY - 2016 DA - 2016// TI - Short communication: multi-trait estimation of genetic parameters for milk protein composition in the Danish Holstein JO - J Dairy Sci VL - 99 UR - https://doi.org/10.3168/jds.2015-10501 DO - 10.3168/jds.2015-10501 ID - Gebreyesus2016 ER - TY - JOUR AU - Sanchez, M. P. AU - Ferrand, M. AU - Gelé, M. AU - Pourchet, D. AU - Miranda, G. AU - Martin, P. PY - 2017 DA - 2017// TI - Short communication: genetic parameters for milk protein composition predicted using mid-infrared spectroscopy in the French Montbéliarde, Normande, and Holstein dairy cattle breeds JO - J Dairy Sci VL - 100 UR - https://doi.org/10.3168/jds.2017-12663 DO - 10.3168/jds.2017-12663 ID - Sanchez2017 ER - TY - JOUR AU - Wedholm, A. AU - Larsen, L. B. AU - Lindmark-Månsson, H. AU - Karlsson, A. H. AU - Andrén, A. PY - 2006 DA - 2006// TI - Effect of protein composition on the cheese-making properties of milk from individual dairy cows JO - J Dairy Sci VL - 89 UR - https://doi.org/10.3168/jds.S0022-0302(06)72366-9 DO - 10.3168/jds.S0022-0302(06)72366-9 ID - Wedholm2006 ER - TY - JOUR AU - Bonfatti, V. AU - Martino, G. AU - Carnier, P. PY - 2011 DA - 2011// TI - Effectiveness of mid-infrared spectroscopy for the prediction of detailed protein composition and contents of protein genetic variants of individual milk of Simmental cows JO - J Dairy Sci VL - 94 UR - https://doi.org/10.3168/jds.2011-4401 DO - 10.3168/jds.2011-4401 ID - Bonfatti2011 ER - TY - STD TI - Ferrand M, Miranda G, Guisnel S, Larroque H, Leray O, Lahalle F, et al. Determination of protein composition in milk by mid-infrared spectrometry. In Proceedings of the international strategies and new developments in milk analysis VI ICAR Reference Laboratory Network Meeting: 28 May 2012; Cork. 2013;16:41–5. ID - ref7 ER - TY - JOUR AU - Sanchez, M. P. AU - Govignon-Gion, A. AU - Ferrand, M. AU - Gele, M. AU - Pourchet, D. AU - Amigues, Y. PY - 2016 DA - 2016// TI - Whole-genome scan to detect quantitative trait loci associated with milk protein composition in 3 French dairy cattle breeds JO - J Dairy Sci VL - 99 UR - https://doi.org/10.3168/jds.2016-11437 DO - 10.3168/jds.2016-11437 ID - Sanchez2016 ER - TY - JOUR AU - Daetwyler, H. D. AU - Capitan, A. AU - Pausch, H. AU - Stothard, P. AU - Binsbergen, R. AU - Brøndum, R. F. PY - 2014 DA - 2014// TI - Whole-genome sequencing of 234 bulls facilitates mapping of monogenic and complex traits in cattle JO - Nat Genet VL - 46 UR - https://doi.org/10.1038/ng.3034 DO - 10.1038/ng.3034 ID - Daetwyler2014 ER - TY - JOUR AU - Raven, L. AU - Cocks, B. AU - Hayes, B. PY - 2014 DA - 2014// TI - Multibreed genome wide association can improve precision of mapping causative variants underlying milk production in dairy cattle JO - BMC Genomics VL - 15 UR - https://doi.org/10.1186/1471-2164-15-62 DO - 10.1186/1471-2164-15-62 ID - Raven2014 ER - TY - STD TI - Ducrocq V. Genekit, BLUP software. Version June 2011. ID - ref11 ER - TY - JOUR AU - Sargolzaei, M. AU - Chesnais, J. P. AU - Schenkel, F. S. PY - 2014 DA - 2014// TI - A new approach for efficient genotype imputation using information from relatives JO - BMC Genomics VL - 15 UR - https://doi.org/10.1186/1471-2164-15-478 DO - 10.1186/1471-2164-15-478 ID - Sargolzaei2014 ER - TY - JOUR AU - Binsbergen, R. AU - Bink, M. C. AU - Calus, M. P. AU - Eeuwijk, F. A. AU - Hayes, B. J. AU - Hulsegge, I. PY - 2014 DA - 2014// TI - Accuracy of imputation to whole-genome sequence data in Holstein Friesian cattle JO - Genet Sel Evol VL - 46 UR - https://doi.org/10.1186/1297-9686-46-41 DO - 10.1186/1297-9686-46-41 ID - Binsbergen2014 ER - TY - JOUR AU - Bouwman, A. C. AU - Veerkamp, R. F. PY - 2014 DA - 2014// TI - Consequences of splitting whole-genome sequencing effort over multiple breeds on imputation accuracy JO - BMC Genet VL - 15 UR - https://doi.org/10.1186/s12863-014-0105-8 DO - 10.1186/s12863-014-0105-8 ID - Bouwman2014 ER - TY - JOUR AU - Boussaha, M. AU - Michot, P. AU - Letaief, R. AU - Hoze, C. AU - Fritz, S. AU - Grohs, C. PY - 2016 DA - 2016// TI - Construction of a large collection of small genome variations in French dairy and beef breeds using whole-genome sequences JO - Genet Sel Evol VL - 48 UR - https://doi.org/10.1186/s12711-016-0268-z DO - 10.1186/s12711-016-0268-z ID - Boussaha2016 ER - TY - JOUR AU - Li, H. AU - Handsaker, B. AU - Wysoker, A. AU - Fennell, T. AU - Ruan, J. AU - Homer, N. PY - 2009 DA - 2009// TI - The sequence alignment/map format and SAMtools JO - Bioinformatics VL - 25 UR - https://doi.org/10.1093/bioinformatics/btp352 DO - 10.1093/bioinformatics/btp352 ID - Li2009 ER - TY - JOUR AU - McLaren, W. AU - Pritchard, B. AU - Rios, D. AU - Chen, Y. AU - Flicek, P. AU - Cunningham, F. PY - 2010 DA - 2010// TI - Deriving the consequences of genomic variants with the Ensembl API and SNP effect predictor JO - Bioinformatics VL - 26 UR - https://doi.org/10.1093/bioinformatics/btq330 DO - 10.1093/bioinformatics/btq330 ID - McLaren2010 ER - TY - JOUR AU - Kumar, P. AU - Henikoff, S. AU - Ng, P. C. PY - 2009 DA - 2009// TI - Predicting the effects of coding non-synonymous variants on protein function using the SIFT algorithm JO - Nat Protoc VL - 4 UR - https://doi.org/10.1038/nprot.2009.86 DO - 10.1038/nprot.2009.86 ID - Kumar2009 ER - TY - JOUR AU - Yang, J. AU - Lee, S. H. AU - Goddard, M. E. AU - Visscher, P. M. PY - 2011 DA - 2011// TI - GCTA: a tool for genome-wide complex trait analysis JO - Am J Hum Genet VL - 88 UR - https://doi.org/10.1016/j.ajhg.2010.11.011 DO - 10.1016/j.ajhg.2010.11.011 ID - Yang2011 ER - TY - JOUR AU - Fu, W. X. AU - Liu, Y. AU - Lu, X. AU - Niu, X. Y. AU - Ding, X. D. AU - Liu, J. F. PY - 2012 DA - 2012// TI - A genome-wide association study identifies two novel promising candidate genes affecting Escherichia coli F4ab/F4ac susceptibility in swine JO - PLoS One VL - 7 UR - https://doi.org/10.1371/journal.pone.0032127 DO - 10.1371/journal.pone.0032127 ID - Fu2012 ER - TY - JOUR AU - Yang, j. AU - Ferreira, T. AU - Morris, A. P. AU - Medland, S. E. PY - 2012 DA - 2012// TI - Conditional and joint multiple-SNP analysis of GWAS summary statistics identifies additional variants influencing complex traits JO - Nat Genet VL - 44 UR - https://doi.org/10.1038/ng.2213 DO - 10.1038/ng.2213 ID - Yang2012 ER - TY - JOUR AU - McLaren, W. AU - Gil, L. AU - Hunt, S. E. AU - Riat, H. S. AU - Ritchie, G. R. AU - Thormann, A. PY - 2016 DA - 2016// TI - The Ensembl variant effect predictor JO - Genome Biol VL - 17 UR - https://doi.org/10.1186/s13059-016-0974-4 DO - 10.1186/s13059-016-0974-4 ID - McLaren2016 ER - TY - JOUR AU - Szklarczyk, D. AU - Franceschini, A. AU - Wyder, S. AU - Forslund, K. AU - Heller, D. AU - Huerta-Cepas, J. PY - 2015 DA - 2015// TI - STRING v10: protein–protein interaction networks, integrated over the tree of life JO - Nucl Acids Res VL - 43 UR - https://doi.org/10.1093/nar/gku1003 DO - 10.1093/nar/gku1003 ID - Szklarczyk2015 ER - TY - JOUR AU - Gautier, M. AU - Laloe, D. AU - Moazami-Goudarzi, K. PY - 2010 DA - 2010// TI - Insights into the genetic history of French cattle from dense SNP data on 47 worldwide breeds JO - PLoS One VL - 5 UR - https://doi.org/10.1371/journal.pone.0013038 DO - 10.1371/journal.pone.0013038 ID - Gautier2010 ER - TY - JOUR AU - Hoze, C. AU - Fouilloux, M. N. AU - Venot, E. AU - Guillaume, F. AU - Dassonneville, R. AU - Fritz, S. PY - 2013 DA - 2013// TI - High-density marker imputation accuracy in sixteen French cattle breeds JO - Genet Sel Evol VL - 45 UR - https://doi.org/10.1186/1297-9686-45-33 DO - 10.1186/1297-9686-45-33 ID - Hoze2013 ER - TY - JOUR AU - Chamberlain, A. J. AU - Jagt, C. J. AU - Hayes, B. J. AU - Khansefid, M. AU - Marett, L. C. AU - Millen, C. A. PY - 2015 DA - 2015// TI - Extensive variation between tissues in allele specific expression in an outbred mammal JO - BMC Genomics VL - 16 UR - https://doi.org/10.1186/s12864-015-2174-0 DO - 10.1186/s12864-015-2174-0 ID - Chamberlain2015 ER - TY - JOUR AU - Kemper, K. E. AU - Reich, C. M. AU - Bowman, P. J. AU - Jagt, C. J. AU - Chamberlain, A. J. AU - Mason, B. A. PY - 2015 DA - 2015// TI - Improved precision of QTL mapping using a nonlinear Bayesian method in a multi-breed population leads to greater accuracy of across-breed genomic predictions JO - Genet Sel Evol VL - 47 UR - https://doi.org/10.1186/s12711-014-0074-4 DO - 10.1186/s12711-014-0074-4 ID - Kemper2015 ER - TY - JOUR AU - Kemper, K. E. AU - Littlejohn, M. D. AU - Lopdell, T. AU - Hayes, B. J. AU - Bennett, L. E. AU - Williams, R. P. PY - 2016 DA - 2016// TI - Leveraging genetically simple traits to identify small-effect variants for complex phenotypes JO - BMC Genomics VL - 17 UR - https://doi.org/10.1186/s12864-016-3175-3 DO - 10.1186/s12864-016-3175-3 ID - Kemper2016 ER - TY - JOUR AU - Raven, L. A. AU - Cocks, B. G. AU - Kemper, K. E. AU - Chamberlain, A. J. AU - Jagt, C. J. AU - Goddard, M. E. PY - 2016 DA - 2016// TI - Targeted imputation of sequence variants and gene expression profiling identifies twelve candidate genes associated with lactation volume, composition and calving interval in dairy cattle JO - Mamm Genome VL - 27 UR - https://doi.org/10.1007/s00335-015-9613-8 DO - 10.1007/s00335-015-9613-8 ID - Raven2016 ER - TY - JOUR AU - Iso-Touru, T. AU - Sahana, G. AU - Guldbrandtsen, B. AU - Lund, M. S. AU - Vilkki, J. PY - 2016 DA - 2016// TI - Genome-wide association analysis of milk yield traits in Nordic red cattle using imputed whole genome sequence variants JO - BMC Genet VL - 17 UR - https://doi.org/10.1186/s12863-016-0363-8 DO - 10.1186/s12863-016-0363-8 ID - Iso-Touru2016 ER - TY - JOUR AU - Berg, I. AU - Boichard, D. AU - Lund, M. S. PY - 2016 DA - 2016// TI - Comparing power and precision of within-breed and multibreed genome-wide association studies of production traits using whole-genome sequence data for 5 French and Danish dairy cattle breeds JO - J Dairy Sci VL - 99 UR - https://doi.org/10.3168/jds.2016-11073 DO - 10.3168/jds.2016-11073 ID - Berg2016 ER - TY - JOUR AU - Littlejohn, M. D. AU - Tiplady, K. AU - Fink, T. A. AU - Lehnert, K. AU - Lopdell, T. AU - Johnson, T. PY - 2016 DA - 2016// TI - Sequence-based association analysis reveals an MGST1 eQTL with pleiotropic effects on bovine milk composition JO - Sci Rep VL - 6 UR - https://doi.org/10.1038/srep25376 DO - 10.1038/srep25376 ID - Littlejohn2016 ER - TY - JOUR AU - Cohen-Zinder, M. AU - Seroussi, E. AU - Larkin, D. M. AU - Loor, J. J. AU - Everts-van der Wind, A. AU - Lee, J. H. PY - 2005 DA - 2005// TI - Identification of a missense mutation in the bovine ABCG2 gene with a major effect on the QTL on chromosome 6 affecting milk yield and composition in Holstein cattle JO - Genome Res VL - 15 UR - https://doi.org/10.1101/gr.3806705 DO - 10.1101/gr.3806705 ID - Cohen-Zinder2005 ER - TY - JOUR AU - Grosclaude, F. PY - 1988 DA - 1988// TI - Le polymorphisme génétique des principales lactoprotéines bovines JO - INRA Prod Anim VL - 1 ID - Grosclaude1988 ER - TY - JOUR AU - Caroli, A. M. AU - Chessa, S. AU - Erhardt, G. J. PY - 2009 DA - 2009// TI - Invited review: milk protein polymorphisms in cattle: effect on animal breeding and human nutrition JO - J Dairy Sci VL - 92 UR - https://doi.org/10.3168/jds.2009-2461 DO - 10.3168/jds.2009-2461 ID - Caroli2009 ER - TY - JOUR AU - Ganai, N. A. AU - Bovenhuis, H. AU - Arendonk, J. A. AU - Visker, M. H. PY - 2009 DA - 2009// TI - Novel polymorphisms in the bovine beta-lactoglobulin gene and their effects on beta-lactoglobulin protein concentration in milk JO - Anim Genet VL - 40 UR - https://doi.org/10.1111/j.1365-2052.2008.01806.x DO - 10.1111/j.1365-2052.2008.01806.x ID - Ganai2009 ER - TY - JOUR AU - Grisart, B. AU - Coppieters, W. AU - Farnir, F. AU - Karim, L. AU - Ford, C. AU - Berzi, P. PY - 2002 DA - 2002// TI - Positional candidate cloning of a QTL in dairy cattle: identification of a missense mutation in the bovine DGAT1 gene with major effect on milk yield and composition JO - Genome Res VL - 12 UR - https://doi.org/10.1101/gr.224202 DO - 10.1101/gr.224202 ID - Grisart2002 ER - TY - JOUR AU - Littlejohn, M. D. AU - Tiplady, K. AU - Lopdell, T. AU - Law, T. A. AU - Scott, A. AU - Harland, C. PY - 2014 DA - 2014// TI - Expression variants of the lipogenic AGPAT6 gene affect diverse milk composition phenotypes in Bos taurus JO - PLoS One VL - 9 UR - https://doi.org/10.1371/journal.pone.0085757 DO - 10.1371/journal.pone.0085757 ID - Littlejohn2014 ER - TY - JOUR AU - Harold, D. AU - Abraham, R. AU - Hollingworth, P. AU - Sims, R. AU - Gerrish, A. AU - Hamshere, M. L. PY - 2009 DA - 2009// TI - Genome-wide association study identifies variants at CLU and PICALM associated with Alzheimer’s disease JO - Nat Genet VL - 41 UR - https://doi.org/10.1038/ng.440 DO - 10.1038/ng.440 ID - Harold2009 ER -