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Table 2 Percentage of validated variants per combination of tools

From: Identification of copy number variation in French dairy and beef breeds using next-generation sequencing

Combination of tools

Number of variants before validation

Number of variants after validation

Validation rate (%)

Pindel + DELLY

7510

3169

42.2

Pindel + CNVnator

2048

1047

51.1

Pindel + BreakDancer

7364

3161

42.9

DELLY + CNVnator

4840

2139

44.2

DELLY + BreakDancer

17,479

4075

23.3

CNVnator + BreakDancer

6060

2327

38.4

Total

19,077

4178