Combination of tools | Number of variants before validation | Number of variants after validation | Validation rate (%) |
---|---|---|---|
Pindel + DELLY | 7510 | 3169 | 42.2 |
Pindel + CNVnator | 2048 | 1047 | 51.1 |
Pindel + BreakDancer | 7364 | 3161 | 42.9 |
DELLY + CNVnator | 4840 | 2139 | 44.2 |
DELLY + BreakDancer | 17,479 | 4075 | 23.3 |
CNVnator + BreakDancer | 6060 | 2327 | 38.4 |
Total | 19,077 | 4178 |