Fig. 5
Theoretical ratio (ASERRcs/ASERRc) between allele substitution effects (ASE) based on unscaled (RRc) and scaled (RRcs) allele counts. Ratio for different allele frequencies (p) based on derivations for a uniform (left) and U-shaped (right) distribution of allele frequency for marker sets. Scenarios based on the number of individuals, i.e., 1000 (1 K; black) and 100,000 (100 K; gray); and number of SNPs, i.e., 50,000 (50 K; square), 800,000 (800 K; dot), 15,000,000 (15 M; triangle). Here, only allele frequencies lower than 0.01 are shown for heritabilities (h2) of 0.2 (first row) and 0.8 (second row)