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Table 4 Genomic coordinates (chromosome and start- and stop-position) of the 32 windows with d i higher than 10, the corresponding population (in brackets, other populations for which the window was significant) and their candidate genes

From: Population structure and genomic inbreeding in nine Swiss dairy cattle populations

BTA Start position End position d i Population (other populations) Candidate genes Associated trait References
4 53,358,285 55,358,285 13.424 ER/EV    
4 78,602,192 80,602,192 10.036 ER/EV INHBA Feed intake [71]
5 16,275,624 18,275,624 10.760 SF (BV, OB, ER/EV) KITLG   [80]
5 46,225,174 48,225,174 11.852 RH (HO, SF, ER/EV)    
5 46,225,174 48,225,174 11.511 HO (RH, SF, ER/EV)    
5 55,558,224 57,558,224 13.108 SI (RH, SF) STAT6 Growth efficiency, carcass traits [81]
5 60,520,962 62,520,962 12.197 SI    
5 75,148,807 77,148,807 10.435 SI (BV, BS) SYT10 Longevity [82]
5 76,432,958 78,432,958 10.735 BS (BV, OB) SYT10 Longevity [82]
6 32,407,621 34,407,621 11.691 BV (BS)    
6 69,255,003 71,255,003 13.069 SI (BV, BS, HO, SF) KIT White spotting [80]
6 77,416,656 79,416,656 12.928 HO (BS, BV, RH, SF, BS, BV)    
6 77,416,656 79,416,656 11.932 RH (BS, BV, HO, SF,)    
11 65,512,895 67,512,895 12.856 OB PROKR1 Fertility [48]
11 67,608,705 69,608,705 17.985 OB (BV, SF, SI, ER/EV) CAPN14, CAPN13, LBH, LCLAT1, GFPT1, EHD3, GMCL1, PCBP1 Fertility, meat quality [48, 75, 76]
11 67,608,705 69,608,705 11.660 SI (BV, OB, SF, ER/EV)
14 23,392,111 25,392,111 18.647 RH (BS, BV, OB, HO, SF, SI, ER/EV) PLAG1, CHCHD7, LYN, TGS1 Stature, fertility [69, 70]
14 23,392,111 25,392,111 15.509 SF (BS, BV, OB, HO, RH, SI, ER/EV)
14 23,392,111 25,392,111 15.050 HO (BS, BV, OB, RH, SF, SI, ER/EV)
14 23,392,111 25,392,111 10.466 OB (BS, BV, HO, RH, SF, SI, ER/EV)
16 24,736,714 26,736,714 15.161 BV (BS, OB, RH, SF, SI) HLX Feed efficiency [83]
16 24,736,714 26,736,714 14.335 BS (BV, OB, RH, SF, SI)
16 26,450,435 28,450,435 10.846 BS (BV, OB) TLR5, CAPN8, CAPN2 Disease resistance, meat quality [75, 84,85,86]
18 13,233,845 15,233,845 25.720 HO (OB, RH, SF, SI) MC1R, SLC7A5, CDH15, GALNS, FANCA Coat color [31,32,33, 87]
18 13,233,845 15,233,845 24.272 RH (OB, HO, SF, SI)
18 13,233,845 15,233,845 10.451 SF (OB, HO, RH, SI)
18 14,373,569 16,373,569 13.715 RH (HO, SF) FANCA   [87]
20 29,194,786 31,194,786 14.835 HO (RH) MRPS30, FGF10 Milk yield. Protein percentage [88, 89]
20 43,561,002 45,561,002 10.593 HO (RH)    
20 46,566,649 48,566,649 12.743 HO (RH, SF, SI) CDH9 Clinical mastitis [90]
20 46,566,649 48,566,649 10.759 RH (HO, SF, SI) CDH9 Clinical mastitis [90]
26 21,528,510 23,528,510 13.360 ER/EV (OB) FGF8, SCD Carcass quality, fertility, fatty acid composition [72,73,74]
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