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Table 1 Identified SCR classified in three groups: (A) specific to Sasi Ardi (SAS) sheep based on the outliers for Z(Hp) and Z(Dp) distribution, (B) common to the two Latxa populations (LAS and LAN) based on the outliers for Z(Hp) and Z(Dp) distribution, and (C) based on the outliers for Z(Fstp) distribution when comparing both Latxa sheep populations (LAS vs. LAN)

From: Genomic selection signatures in sheep from the Western Pyrenees

Group SCR Chr Start (kb) End (kb) Number of genes Candidate genes and selected traitsa
A SCR1 2 219,400 219,650 14 SLC11A1 (immunity)
SCR2 3 182,650 183,050 5  
SCR3 4 35,150 35,350 2  
SCR4 4 63,050 63,250 3 BBS9 (metabolism)
SCR5 6 24,650 24,950 7 H2AFZ (reproduction)
SCR6 6 44,750 45,000 7  
SCR7 6 48,300 48,500 3  
SCR8 7 42,000 42,250 5 NID2 (reproduction)
SCR9 8 7950 8300 0  
SCR10 8 31,900 32,250 4  
SCR11 8 90,100 90,300 6  
SCR12 11 18,300 18,550 5  
SCR13 19 29,600 29,800 1  
SCR14 20 15,050 15,300 11 TREM1 and TREM2 (immunity)
SCR15 22 22,050 22,250 15 NFKB2 (immunity), LDB1 (metabolism), ELOVL3 (metabolism)
SCR16 24 10,250 10,500 10  
B SCR17 1 234,800 23,5000 8 GPR171 (feeding and metabolism)
SCR18 2 115,000 115,200 0  
SCR19 3 124,800 125,000 1 KITLG (pigmentation/reproduction/milk production)
SCR20b 6 36,450 38,400 19 ABCG2, SPP1, LAP3, NCAPG, and MEPE (milk production), NCAPG and LCORL (body size)
SCR21 7 72,550 72,600 7  
SCR22 18 23,600 23,850 3  
SCR23 19 43,300 43,500 5  
SCR24 24 34,650 34,800 6 SH2B2 (body size)
C SCR25 2 202,050 202,350 12 BZW1 (reproduction)
SCR26 8 75,350 75,550 1 ESR1 (reproduction)
SCR27 11 18,350 18,550 5  
SCR28 13 350 550 0  
SCR29 13 58,750 58,950 14  
SCR30 15 46,150 46,350 20 OR56A1, OR52W1, OR52B2, OR56B4, OR56A3, CNGA4 (scrapie)
SCR31 16 9050 9350 6 ZNF366 (reproduction)
SCR32 22 29,050 29,250 2  
  1. SCR selected candidate regions; chr chromosome number
  2. aSCR were extended 100 Kb up- and downstream for gene annotation
  3. bThree continuous SCR regions on OAR6 were merged: 36,450,000 bp to 37,000,000 bp, 37,050,000 bp to 38,100,000 bp, and 38,200,000 bp to 38,400,000 bp