From: Utility of whole-genome sequence data for across-breed genomic prediction
 | Across-breed, across-country | Across-breed, within-country | Within-breed, across-country | |||
---|---|---|---|---|---|---|
Reference | DH | NZJ | NZH | NZJ | NZH | DH |
Validation | NZJ | DH | NZJ | NZH | DH | NZH |
Scenarios with unselected markers (number of markers) | ||||||
Full_seq (14,341,737) | 0.08 | 0.02 | 0.09 | 0.06 | 0.41 | 0.51 |
HD (583,078) | 0.10 | 0.05 | 0.07 | − 0.04 | 0.43 | 0.55 |
50k (48,912) | 0.06 | 0.05 | 0.13 | − 0.04 | 0.42 | 0.52 |
Scenarios with unselected markers + selected markers (number of markers) | ||||||
HD_Top (583,194 | 0.10 | 0.05 | 0.07 | − 0.04 | 0.43 | 0.55 |
50k_Top (49,045) | 0.07 | 0.06 | 0.13 | − 0.03 | 0.43 | 0.53 |
Scenarios with only selected markers (number of markers) | ||||||
Pval5 (59,828) | 0.19 | 0.19 | 0.14 | 0.32 | 0.52 | 0.58 |
Pval7 (23,125) | 0.01 | 0.15 | 0.07 | 0.35 | 0.46 | 0.47 |
COJO3 (1570) | 0.20 | 0.22 | 0.14 | 0.31 | 0.45 | 0.52 |
COJO8 (360) | 0.21 | 0.25 | 0.16 | 0.18 | 0.47 | 0.44 |
Top_markers (133) | 0.23 | 0.18 | 0.08 | 0.27 | 0.41 | 0.47 |
SE* | 0.04 | 0.01 | 0.04 | 0.03 | 0.01 | 0.01 |