Conservation status and historical relatedness of Italian cattle breeds

Mastrangelo, Salvatore; Ciani, Elena; Ajmone Marsan, Paolo; Bagnato, Alessandro; Battaglini, Luca; Bozzi, Riccardo; Carta, Antonello; Catillo, Gennaro; Cassandro, Martino; Casu, Sara; Ciampolini, Roberta; Crepaldi, Paola; D’Andrea, Mariasilvia; Di Gerlando, Rosalia; Fontanesi, Luca; Longeri, Maria; Macciotta, Nicolò P.; Mantovani, Roberto; Marletta, Donata; Matassino, Donato; Mele, Marcello; Pagnacco, Giulio; Pieramati, Camillo; Portolano, Baldassare; Sarti, Francesca M.; Tolone, Marco; Pilla, Fabio

doi:10.1186/s12711-018-0406-x

Genetics Selection Evolution

Table 1 Genetic diversity indices for the analyzed Italian cattle breeds

From: Conservation status and historical relatedness of Italian cattle breeds

Breed	H_o ± SD	H_e ± SD	H_e_hap ± SD	MAF ± SD	F_HOM ± SD	cN_e
Agerolese	0.346 ± 0.176	0.338 ± 0.150	0.372 ± 0.020	0.255 ± 0.145	0.058 ± 0.051	13.6
Bara’-Pustertaler	0.349 ± 0.167	0.342 ± 0.145	0.378 ± 0.021	0.258 ± 0.143	0.051 ± 0.055	31.5
Burlina	0.353 ± 0.169	0.344 ± 0.147	0.377 ± 0.017	0.261 ± 0.143	0.041 ± 0.044	38.0
Cabannina	0.347 ± 0.174	0.336 ± 0.151	0.378 ± 0.013	0.254 ± 0.146	0.056 ± 0.032	35.0
Calvana	0.307 ± 0.198	0.294 ± 0.175	0.334 ± 0.024	0.221 ± 0.158	0.167 ± 0.063	33.5
Charolais	0.353 ± 0.166	0.346 ± 0.144	0.377 ± 0.015	0.262 ± 0.142	0.039 ± 0.066	67.8
Chianina	0.327 ± 0.177	0.323 ± 0.158	0.357 ± 0.016	0.242 ± 0.149	0.111 ± 0.048	118.3
Cinisara	0.343 ± 0.155	0.348 ± 0.141	0.379 ± 0.027	0.263 ± 0.140	0.068 ± 0.070	55.5
Garfagnina	0.312 ± 0.199	0.300 ± 0.177	0.329 ± 0.019	0.226 ± 0.158	0.151 ± 0.053	23.6
Italian Brown	0.307 ± 0.187	0.299 ± 0.171	0.335 ± 0.013	0.223 ± 0.154	0.166 ± 0.033	44.5
Italian Holstein	0.344 ± 0.171	0.338 ± 0.154	0.361 ± 0.014	0.256 ± 0.148	0.064 ± 0.036	60.4
Italian Simmental	0.340 ± 0.168	0.332 ± 0.152	0.368 ± 0.009	0.249 ± 0.145	0.079 ± 0.023	80.7
Limousin	0.345 ± 0.177	0.335 ± 0.152	0.375 ± 0.010	0.253 ± 0.146	0.062 ± 0.024	468.9
Marchigiana	0.339 ± 0.173	0.333 ± 0.151	0.374 ± 0.009	0.250 ± 0.145	0.078 ± 0.023	161.5
Maremmana	0.325 ± 0.192	0.311 ± 0.167	0.357 ± 0.019	0.234 ± 0.154	0.118 ± 0.049	20.3
Modenese	0.341 ± 0.174	0.332 ± 0.153	0.372 ± 0.018	0.251 ± 0.147	0.073 ± 0.045	22.8
Modicana	0.329 ± 0.171	0.328 ± 0.156	0.363 ± 0.025	0.247 ± 0.148	0.105 ± 0.067	69.1
Mucca Pisana	0.301 ± 0.225	0.267 ± 0.187	0.317 ± 0.023	0.200 ± 0.162	0.183 ± 0.058	8.7
Pezzata R. D’oropa	0.333 ± 0.178	0.327 ± 0.158	0.362 ± 0.021	0.246 ± 0.149	0.096 ± 0.054	28.3
Piedmontese	0.358 ± 0.167	0.347 ± 0.141	0.390 ± 0.003	0.262 ± 0.141	0.027 ± 0.011	565.2
Pinzgau	0.349 ± 0.174	0.337 ± 0.151	0.376 ± 0.012	0.254 ± 0.145	0.051 ± 0.030	44.3
Podolica	0.343 ± 0.157	0.349 ± 0.140	0.377 ± 0.029	0.264 ± 0.140	0.066 ± 0.073	110.2
Pontremolese	0.297 ± 0.194	0.292 ± 0.176	0.323 ± 0.040	0.218 ± 0.157	0.195 ± 0.101	7.2
Pustertaler	0.339 ± 0.185	0.323 ± 0.161	0.369 ± 0.011	0.243 ± 0.151	0.078 ± 0.028	26.6
Reggiana	0.346 ± 0.175	0.336 ± 0.150	0.374 ± 0.015	0.253 ± 0.145	0.059 ± 0.040	101.2
Rendena	0.332 ± 0.178	0.325 ± 0.158	0.362 ± 0.010	0.244 ± 0.149	0.096 ± 0.024	527.5
Romagnola	0.325 ± 0.184	0.317 ± 0.163	0.356 ± 0.011	0.238 ± 0.151	0.117 ± 0.026	265.8
Rossa Siciliana	0.356 ± 0.166	0.345 ± 0.143	0.388 ± 0.009	0.261 ± 0.141	0.032 ± 0.023	33.3
Sarda	0.346 ± 0.151	0.353 ± 0.137	0.377 ± 0.025	0.267 ± 0.139	0.060 ± 0.063	62.2
Sardo-Bruna	0.338 ± 0.193	0.334 ± 0.153	0.367 ± 0.034	0.252 ± 0.147	0.082 ± 0.086	1021.3
Sardo-Modicana	0.344 ± 0.168	0.338 ± 0.149	0.378 ± 0.013	0.255 ± 0.145	0.065 ± 0.031	54.8
Varzese-Ottonese	0.351 ± 0.160	0.343 ± 0.145	0.381 ± 0.028	0.259 ± 0.142	0.046 ± 0.071	31.0

Observed (H_o) and expected (H_e) heterozygosity, (H_e_hap) expected heterozygosity based on the haplotypes, average minor allele frequency (MAF), inbreeding coefficient (F_HOM), contemporary effective population size (cN_e) and standard deviation (SD)

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ISSN: 1297-9686

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