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Table 5 Numbers and lengths ROH islands that were affected by CNV and gaps

From: Misidentification of runs of homozygosity islands in cattle caused by interference with copy number variation or large intermarker distances

Breed

ROH islands affected by

Number of affected ROH islands

Coverage (Mb)

As the percentage of total ROH island coverage

Brown Swiss (ROH island coverage = 26.637)

Gain + loss

3

4.073

15.3

Gap

1

1.459

5.5

Gap + gain + loss

1

1.109

4.2

Loss

2

9.855

37.0

Overall

7

16.496

61.9

Tyrol Grey (ROH island coverage = 35.847)

Gain

1

1.417

4.0

Gap

3

4.225

11.8

Gap + gain + loss

2

5.789

16.1

Gap + loss

2

2.931

8.2

Loss

6

12.939

36.1

Overall

14

27.301

76.2

Pinzgauer (ROH island coverage = 38.978)

Gap

3

1.811

4.6

Gap + gain + loss

3

6.834

17.5

Gap + loss

2

4.382

11.2

Loss

8

15.879

40.7

Overall

16

28.905

74.2