Skip to main content

Table 5 Numbers and lengths ROH islands that were affected by CNV and gaps

From: Misidentification of runs of homozygosity islands in cattle caused by interference with copy number variation or large intermarker distances

Breed ROH islands affected by Number of affected ROH islands Coverage (Mb) As the percentage of total ROH island coverage
Brown Swiss (ROH island coverage = 26.637) Gain + loss 3 4.073 15.3
Gap 1 1.459 5.5
Gap + gain + loss 1 1.109 4.2
Loss 2 9.855 37.0
Overall 7 16.496 61.9
Tyrol Grey (ROH island coverage = 35.847) Gain 1 1.417 4.0
Gap 3 4.225 11.8
Gap + gain + loss 2 5.789 16.1
Gap + loss 2 2.931 8.2
Loss 6 12.939 36.1
Overall 14 27.301 76.2
Pinzgauer (ROH island coverage = 38.978) Gap 3 1.811 4.6
Gap + gain + loss 3 6.834 17.5
Gap + loss 2 4.382 11.2
Loss 8 15.879 40.7
Overall 16 28.905 74.2
\