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Table 2 Summary of CNV identified for each line and each genotyping panel

From: Detection of copy number variations in brown and white layers based on genotyping panels with different densities

Line SNP panela Number of individuals Number of individuals that pass quality control Total number of CNVb Mean N of CNV per individual Mean length (kb) Length range (kb)
W1 50K w 3350 3308 2053 0.62 88.1 1.8–955.7
600K 253 252 772 3.06 25.9 1.2–271.9
W2 50K w 3215 3172 1575 0.50 76.9 1.9–1294.6
50K b 2401 2253 1844 0.82 111.3 1.4–1493.0
600K 748 714 1409 1.97 37.2 1.5–428.7
Hybrids (w) 600K 806 769 2261 2.94 31.1 1.4–1116.2
B1 50K b 5908 5284 6203 1.17 216.0 1.7–3160.2
600K 241 238 1158 4.87 24.9 1.2–663.1
B2 42K 1797 1716 2250 1.31 90.9 1.4–1658.3
All lines 18,719 17,706 19,525 1.10 51.1 1.1–3160.2
  1. aw white-egg lines, b brown-egg lines
  2. bTotal number of detected CNV for all individuals: all occurrences of CNV were counted