Impact of rare and low-frequency sequence variants on reliability of genomic prediction in dairy cattle

Table 3 Bias of the GEBV measured by regression slope in different methods of selection of rare and low-frequency variants (RLFV)

Methods of selection of RLFV	Fertility	Health	Longevity
50 k SNP array	0.993	0.902	0.851
50 k + all genic RLFV	1.046	0.950	0.939
50 k + RLFV in genes with significant association	1.012	0.913	0.925
50 k + RLFV with medium-to-high impact annotations	1.040	0.956	0.931
50 k + RLFV with high impact annotations	1.038	0.935	0.902

ISSN: 1297-9686