Skip to main content

Table 2 Suggestively significant SNPs with their GalGal 5.0 location (chromosome and position in base pairs) and P values for each of the measured phenotypic traits

From: Phenotypic and genetic variation in the response of chickens to Eimeria tenella induced coccidiosis

SNP

Location Chr: bp

P value

\(h^{2}\) trait (SE)

\(V_{\text{P}}\) trait (SE)

Minor allele frequency

\(h^{2}\) SNP

\(a\) (SE)

P (\(a\))

\(d\) (SE)

P (\(d\))

WG_1

11:4,244,594

1.34 × 10−5

0.191 (0.093)

0.683 (0.033)

0.43

0.026

21.05 (4.99)

< 0.001

− 6.37 (6.37)

0.241

WG_2

11:11,383,252

1.49 × 10−5

0.42

0.026

22.42 (5.00)

< 0.001

3.46 (6.46)

0.346

CLS_1

12:17,993,212

4.62 × 10−5

0.071 (0.083)

0.930 (0.044)

0.33

0.001

0.19 (0.08)

0.019

0.054 (0.094)

0.337

IL-10_1

4:7,575,042

2.763 × 10−5

0 (0)

0.921 (0.047)

0.28

–

–

–

–

–

  1. Univariate linear mixed models performed using Eq. 2 (ASReml 4.0), provided the trait phenotypic variance (\(V_{\text{P}}\); means-adjusted) and trait heritability (\(h^{2}\)) with standard errors (SE). The non-means-centered additive (\(a\)) and dominance (\(d\)) effects of the SNPs are presented with their significance values (P). SNP heritabilities (\(h^{2}\) SNP) were calculated as additive variance of the SNP divided by \(V_{\text{P}}\) of the trait. Major (\(p\)) and minor (\(q\)) SNP allele frequencies are also presented. Non-estimable values for the IL-10 SNP are indicated (−)