Fig. 7

Genomic relationships at causal loci versus markers when causal loci have different allele frequencies in the two populations. The genomic relationships at the causal loci versus the genomic relationships based on the a HDP (200,000) markers, b MDP (20,000) markers, or c LDP (2000) markers, when markers have similar and causal loci different allele frequencies in the two populations for one replicate. Relationships in population \({\text{A}}\) are represented in dark blue (Eq. 1 of regression line and correlation), relationships in population \({\text{B}}\) are represented in medium blue (Eq. 2 of regression line and correlation), and relationships between population \({\text{A}}\) and \({\text{B}}\) are represented in light blue (Eq. 3 of regression line and correlation)