Skip to main content

Table 1 Number of biallelic SNPs discovered on chromosome 1 with low and high sequencing coverage and percentage of overlap with the SNP genotyping array

From: Impact of index hopping and bias towards the reference allele on accuracy of genotype calls from low-coverage sequencing

 

Low coverage

High coverage

Number of variants

1,333,943

1,693,308

Overlap with high-coverage data

96.9%

–

Overlap with low-coverage data

–

76.3%

Overlap with the SNP genotyping arraya

88.9%

95.7%

  1. aRelative to the 5779 variants present in the SNP genotyping array GGP-Porcine HD BeadChip (GeneSeek, Lincoln, NE) that segregated in the 26 individuals tested
Back to article page

Genetics Selection Evolution

ISSN: 1297-9686