Fig. 3
Individual imputation accuracy as a function of birth order. The lines show the rolling average for 1000 individuals when the focal individuals (green), the focal and low coverage sires (blue), or the focal and all low coverage (all sequenced) individuals (red) were used for imputation with AlphaPeel. The grey dots show accuracy for each individual when the focal and all low coverage (all sequenced) individuals were used for imputation with AlphaPeel. The black line shows the rolling average for 1000 individuals from findhap when run with the focal and all low coverage (all sequenced) individuals. The vertical dotted line represents the break between the first quintile of individuals and the remaining four quintiles of individuals