Fig. 2
From: Accuracy of imputation to whole-genome sequence in sheep
Empirical imputation accuracy of most likely whole-genome sequence genotypes based on FImpute (FI012) and Minimac3 (MM012) and of the Minimac3 allele dosage probability (MMprob) in a Merino (MER) target population, using a mixed breed reference set (‘ALL’). Imputation accuracy is before and after imposing Minimac3 R2 thresholds to filter the imputed sequence data: thr0 = no threshold, thr4 = R2 > 0.4, and thr8 = R2 > 0.8. Imputation accuracy was measured as the correlation between imputed and observed sequence genotypes in the target population