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Table 4 Significant SNPs according to Bonferroni correction for direct genetic effects on body weight recorded at different ages

From: Genome-wide associations and detection of potential candidate genes for direct genetic and maternal genetic effects influencing dairy cattle body weight at different ages

SNP Chr Position Ref allele Effect BW0 BW23 BW1314
Phen dDRP Phen dDRP Phen dDRP
INRA-658 3 29627982 A       Xc
BTB-01695573 4 10794285 C + Xb Xb     
ARS-BFGL-NGS-3933 5 105695909 G   Xa     
Hapmap47397-BTA-74925 5 105744830 A Xab Xab     Xac
Hapmap60480-ss46526970 5 105870613 C Xab Xab   Xac Xac Xac
ARS-BFGL-NGS-39379 5 106269362 G Xab Xab    Xc Xac
ARS-BFGL-NGS-10732 5 106780606 G      Xac Xac
Hapmap57466-rs29018274 5 107362671 A +   Xa   Xa   Xa
ARS-BFGL-NGS-5139 7 92474466 A +   Xb     
ARS-BFGL-NGS-107035 7 93007435 A + Xb Xab     
ARS-BFGL-NGS-109285 18 57589121 A +   Xb    Xac Xac
ARS-BFGL-NGS-109317 29 49906123 A + Xb      
ARS-BFGL-NGS-40378 29 50296573 A + Xb Xb     
  1. BW0: body weight recorded at birth; BW23: body weight recorded at 2 to 3 month of age; BW1314: body weight recorded at 13 to 14 months of age
  2. The indicated significant SNPs are from runs that consider the following similarity matrices: athe genomic relationship matrix \({\mathbf{G}}\), bLOCO + CHR_PC20 and cLOCO + CHR_PC10