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Table 2 Descriptive statistics of results of the GWAS for the two lines using different SNP densities and imputed whole-genome sequence dosage or genotype scores

From: Imputation to whole-genome sequence using multiple pig populations and its use in genome-wide association studies

 

Threshold

Number of QTL regions

Genomic inflation factors

DL-line

 80 K SNP genotypes

3.7

48

1.80

 660 K SNP genotypes

3.7

48

2.05

 iWGS_genotype scores

3.7

94

1.81

 iWGS_dosage scores

3.7

217

1.51

LW-line

 80 K

4.2

37

3.50

 660 K

4.2

60

3.63

 iWGS_genotype

4.2

104

3.45

 iWGS_dosage

4.2

132

3.18