Table 3 SNPs of the 3SR-mastitis-960-SNP custom chip, selected within the 3SR EU project for their association with mastitis-related traits
From: A validation study of loci associated with mastitis resistance in two French dairy sheep breeds
OAR | Discovery population | QTLa (Mb) | Interval (Mb) | Origin of the SNP | Number of SNPs | |||||
|---|---|---|---|---|---|---|---|---|---|---|
Start | End | 54 K chip | 800 K chip | SEQ | Before QC | After QC LAC | After QC MTR | |||
2 | LAC | 125 | 124.6 | 125.5 | 19 | 10 | 29 | 24 | 24 | |
2 | SAR | 206.7 | 204.2 | 209.7 | 106 | 146 | 252 | 196 | 180 | |
CHU | 208.7 | |||||||||
3 | LAC | 129.7 | 129.7 | 130.1 | 4 | 6 | 10 | 20 | 13 | 12 |
5 | LAC | 96.5 | 95.8 | 96.2 | 11 | 9 | 20 | 17 | 16 | |
12 | CHU | 18.3 | 17.9 | 20.4 | 54 | 76 | 130 | 101 | 97 | |
SAR | 18.4 | |||||||||
16 | LAC | 36.2 | 28.3 | 36.8 | 144 | 110 | 254 | 202 | 183 | |
19 | CHU | 26.3 | 23.6 | 28.9 | 75 | 180 | 255 | 202 | 196 | |
LAC | 28.6 | |||||||||