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Table 3 Identified haplotypes carrying putatively recessive lethal or semi-lethal alleles

From: Analysis of a large dataset reveals haplotypes carrying putatively recessive lethal and semi-lethal alleles with pleiotropic effects on economically important traits in beef cattle

Haplotype name Testa Chrb Haplotype region Sliding window Start base End base Haplotype percentage
AA14H1 T4 14 AA14R1 4 6,819,966 7,514,610 25.2
AA14H2 T4 14 AA14R2 9 7,646,485 8,425,401 15.3
AA14H3 T4 14 AA14R3 20 8,064,004 8,927,881 15.2
AA14H4 T3 14 AA14R3 9 8,454,690 9,215,622 15.3
AA18H5 T4 18 AA14R4 4 49,446,631 50,616,688 18.9
AA19H6 T4 19 AA14R5 8 48,850,043 48,874,999 23.9
CH13H1 T4 13 CH13R1 19 61,565,261 61,584,644 33.5
CH19H2 T4 19 CH19R2 5 48,874,999 48,902,319 14.4
CH19H3 T3 19 CH19R2 12 48,889,025 48,914,435 1.2
HE6H1 T4 6 HE6R1 8 58,473,731 59,706,074 30.2
HE6H2 T4 6 HE6R2 4 59,688,857 60,919,136 28.8
HE19H3 T2, T4 19 HE19R3 13 48,854,119 48,900,428 28.9
LI19H1 T5 19 LI19R1 20 48,851,566 48,871,260 12.7
LI19H2 T2 19 LI19R1 11 48,883,348 48,906,682 11.1
LI23H3 T4 23 LI23R2 20 27,923,154 28,649,349 13.7
LI23H4 T4 23 LI23R3 12 28,307,706 29,872,481 11.5
SI13H1 T2 13 SI13R1, SI13R2 15 73,746,516 74,973,171 9.5
SI13H2 T4 13 SI13R1, SI13R2, SI13R3 19 73,895,443 75,240,419 22.3
SI13H3 T2 13 SI13R2, SI13R3 1 74,109,992 75,310,875 9.3
SI16H4 T2 16 SI16R4, SI16R5 16 51,195,450 53,097,936 10.8
SI16H5 T1 16 SI16R4, SI16R5 4 51,811,400 53,434,159 8.8
SI19H6 T2, T4 19 SI19R6 18 48,873,060 48,891,361 18.4
  1. aT1: population test; T2: carrier mating test on sire × dam matings; T3: carrier mating test on sire × maternal grand-sire matings; T4: semi-lethality test on sire × dam matings; T5: semi-lethality test on sire × maternal grand-sire matings
  2. bChr: chromosome number
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