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Table 3 Mean predictive abilitya (PA) and between brackets root mean square error of the prediction (RMSE) for models M4, M5, M6 and M7 and P value for the differences in PA between M4 versus M6, M5 versus M6, and M6 versus M7

From: Impact of the rumen microbiome on milk fatty acid composition of Holstein cattle

Trait

Mean PA (RMSE) M4

Mean PA (RMSE) M5

Mean PA (RMSE) M6

Mean PA (RMSE) M7

P value M4 versus M6

P value M5 versus M6

P value M6 versus M7

Fat %

0.09 (0.75)

0.15 (0.75)

0.13 (0.75)

0.13 (0.75)

0.34

0.45

0.96

Protein %

0.14 (0.28)

0.03 (0.28)

0.11 (0.28)

0.12 (0.28)

0.39

0.02

0.84

C6:0

0.15 (0.37)

− 0.07 (0.37)

0.14 (0.37)

0.15 (0.37)

0.93

3.70e−10*

0.92

C8:0

0.15 (0.25)

− 0.12 (0.24)

0.15 (0.24)

0.15 (0.24)

0.97

8.15e−13*

0.97

C10:0

0.10 (0.53)

− 0.14 (0.53)

0.10 (0.53)

0.10 (0.53)

1.00

5.38e−11*

0.84

C12:0

0.17 (0.59)

− 0.10 (0.59)

0.16 (0.59)

0.16 (0.59)

0.89

2.70e−10*

0.94

C13:0

0.09 (0.03)

0.18 (0.03)

0.16 (0.03)

0.16 (0.03)

0.08

0.46

1.00

C14:0

− 0.03 (1.20)

0.08 (1.21)

0.06 (1.21)

0.04 (1.22)

0.01

0.54

0.61

C14:1 cis-9

0.37 (0.24)

0.06 (0.26)

0.37 (0.24)

0.37 (0.24)

1.00

4.94e−18*

1.00

C15:0

0.22 (0.14)

0.34 (0.14)

0.38 (0.13)

0.38 (0.13)

9.50e−07*

0.15

0.90

C16:0

0.12 (2.42)

− 0.17 (2.42)

0.11 (2.42)

0.10 (2.42)

0.92

1.81e−10*

0.80

C16:1 cis-9

0.23 (0.44)

− 0.11 (0.45)

0.23 (0.44)

0.23 (0.44)

1.00

3.10e−17*

1.00

C17:0

0.15 (0.08)

0.07 (0.08)

0.10 (0.08)

0.10 (0.08)

0.18

0.39

0.92

C18:0

0.16 (1.30)

0.07 (1.33)

0.12 (1.31)

0.12 (1.31)

0.23

0.19

0.96

C18:1 trans-11

0.07 (0.19)

0.02 (0.19)

0.03 (0.19)

0.03 (0.19)

0.24

0.87

0.93

C18:1 cis-9

0.11 (2.66)

− 0.13 (2.66)

0.11 (2.66)

0.00 (2.67)

0.99

4.15e−10*

3.20e−03

C18:2 n-6

0.09 (0.23)

0.16 (0.23)

0.15 (0.23)

0.15 (0.23)

0.08

0.71

1.00

C18:3 n-3

− 0.08 (0.08)

0.29 (0.07)

0.29 (0.08)

0.29 (0.08)

8.81e−18*

1.00

1.00

CLA cis-9, trans-11

0.15 (0.09)

0.16 (0.09)

0.14 (0.09)

0.13 (0.09)

0.77

0.56

0.81

  1. *Significant after Bonferroni correction for multiple testing at the P < 0.05 level (n = 57 comparisons)
  2. aAverage correlation between predicted and real FA phenotype in the validation set over 10 replicates of the validation