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Table 3 Average percentage of the genome, stratified by chromosome, covered by runs of homozygosity (ROH)

From: Genomic measures of inbreeding in the Norwegian–Swedish Coldblooded Trotter and their associations with known QTL for reproduction and health traits

Chromosome Average ROH (%)
A B C D E F G H
1 10.08 12.67 14.89 15.05 13.59 13.58 7.35 11.34
2 9.40 11.67 13.89 14.08 12.02 12.02 8.62 10.74
3 9.18 11.07 12.66 12.74 12.27 12.24 10.02 9.11
4 10.09 12.27 13.82 13.99 13.16 13.17 11.50 10.61
5 10.38 12.28 14.28 14.46 13.06 13.05 10.62 11.10
6 8.30 10.34 12.58 12.69 10.57 10.57 8.21 10.23
7 10.41 12.23 14.29 14.48 13.12 13.07 9.53 9.58
8 8.61 10.07 11.02 11.05 10.43 10.45 11.73 8.93
9 9.25 10.88 12.90 13.05 11.67 11.65 10.15 8.94
10 9.90 12.09 14.11 14.29 13.05 13.05 11.04 9.87
11 9.29 11.00 12.81 12.84 11.73 11.70 11.76 8.21
12 11.10 12.76 14.74 14.79 12.77 12.73 15.28 11.02
13 12.96 14.70 15.64 15.76 14.43 14.43 14.28 13.06
14 8.96 10.81 12.24 12.34 11.34 11.31 9.85 9.81
15 10.40 12.08 13.36 13.52 12.66 12.68 11.43 10.96
16 13.10 15.72 17.43 17.58 16.45 16.45 12.72 14.17
17 9.19 10.88 11.94 12.01 10.65 10.63 12.94 10.72
18 7.23 8.74 9.78 9.84 8.80 8.81 9.56 8.30
19 9.95 12.08 13.04 13.19 11.51 11.53 13.29 11.15
20 8.11 9.66 11.44 11.54 9.69 9.69 8.43 9.91
21 9.86 11.69 12.67 12.68 11.36 11.36 13.65 11.23
22 11.34 13.04 13.89 13.96 12.34 12.32 16.26 12.59
23 8.29 9.58 10.42 10.58 9.16 9.22 14.82 8.78
24 10.13 11.70 12.87 12.89 11.20 11.19 15.51 11.28
25 12.33 13.44 13.87 13.88 12.24 12.45 19.26 12.93
26 12.48 14.68 15.46 15.56 12.97 12.98 16.99 14.06
27 11.11 12.65 13.64 13.59 12.01 12.00 18.84 12.35
28 10.02 11.60 12.39 12.44 10.91 10.97 14.89 11.07
29 11.28 12.96 14.24 14.40 12.45 12.43 17.81 12.05
30 11.43 13.11 14.24 14.48 11.08 11.08 23.12 12.27
31 14.51 17.03 18.55 18.82 16.25 16.25 22.79 16.81
  1. A = 50snp_500 kb _100snp_0_0; B = 50snp_500 kb _100snp_0_2; C = 50snp_500 kb _100snp_1_2; D = 50snp_500 kb _100snp_1_5; E = 50snp_500 kb _15snp_0_1; F = 50snp_500 kb _50snp_0_1; G = 500snp_500 kb _50snp_0_1; H = pruned_50snp_500 kb _50snp_0_1 (FORMAT: “sliding window size”_”minimum length (kb) for a run to be called as a ROH”_”minimum number of SNPs for a run to be called as a ROH”_”number of heterozygous SNPs allowed in a ROH”_”number of missing calls allowed in a ROH”)