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Table 3 Average percentage of the genome, stratified by chromosome, covered by runs of homozygosity (ROH)

From: Genomic measures of inbreeding in the Norwegian–Swedish Coldblooded Trotter and their associations with known QTL for reproduction and health traits

Chromosome

Average ROH (%)

A

B

C

D

E

F

G

H

1

10.08

12.67

14.89

15.05

13.59

13.58

7.35

11.34

2

9.40

11.67

13.89

14.08

12.02

12.02

8.62

10.74

3

9.18

11.07

12.66

12.74

12.27

12.24

10.02

9.11

4

10.09

12.27

13.82

13.99

13.16

13.17

11.50

10.61

5

10.38

12.28

14.28

14.46

13.06

13.05

10.62

11.10

6

8.30

10.34

12.58

12.69

10.57

10.57

8.21

10.23

7

10.41

12.23

14.29

14.48

13.12

13.07

9.53

9.58

8

8.61

10.07

11.02

11.05

10.43

10.45

11.73

8.93

9

9.25

10.88

12.90

13.05

11.67

11.65

10.15

8.94

10

9.90

12.09

14.11

14.29

13.05

13.05

11.04

9.87

11

9.29

11.00

12.81

12.84

11.73

11.70

11.76

8.21

12

11.10

12.76

14.74

14.79

12.77

12.73

15.28

11.02

13

12.96

14.70

15.64

15.76

14.43

14.43

14.28

13.06

14

8.96

10.81

12.24

12.34

11.34

11.31

9.85

9.81

15

10.40

12.08

13.36

13.52

12.66

12.68

11.43

10.96

16

13.10

15.72

17.43

17.58

16.45

16.45

12.72

14.17

17

9.19

10.88

11.94

12.01

10.65

10.63

12.94

10.72

18

7.23

8.74

9.78

9.84

8.80

8.81

9.56

8.30

19

9.95

12.08

13.04

13.19

11.51

11.53

13.29

11.15

20

8.11

9.66

11.44

11.54

9.69

9.69

8.43

9.91

21

9.86

11.69

12.67

12.68

11.36

11.36

13.65

11.23

22

11.34

13.04

13.89

13.96

12.34

12.32

16.26

12.59

23

8.29

9.58

10.42

10.58

9.16

9.22

14.82

8.78

24

10.13

11.70

12.87

12.89

11.20

11.19

15.51

11.28

25

12.33

13.44

13.87

13.88

12.24

12.45

19.26

12.93

26

12.48

14.68

15.46

15.56

12.97

12.98

16.99

14.06

27

11.11

12.65

13.64

13.59

12.01

12.00

18.84

12.35

28

10.02

11.60

12.39

12.44

10.91

10.97

14.89

11.07

29

11.28

12.96

14.24

14.40

12.45

12.43

17.81

12.05

30

11.43

13.11

14.24

14.48

11.08

11.08

23.12

12.27

31

14.51

17.03

18.55

18.82

16.25

16.25

22.79

16.81

  1. A = 50snp_500 kb _100snp_0_0; B = 50snp_500 kb _100snp_0_2; C = 50snp_500 kb _100snp_1_2; D = 50snp_500 kb _100snp_1_5; E = 50snp_500 kb _15snp_0_1; F = 50snp_500 kb _50snp_0_1; G = 500snp_500 kb _50snp_0_1; H = pruned_50snp_500 kb _50snp_0_1 (FORMAT: “sliding window size”_”minimum length (kb) for a run to be called as a ROH”_”minimum number of SNPs for a run to be called as a ROH”_”number of heterozygous SNPs allowed in a ROH”_”number of missing calls allowed in a ROH”)
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Genetics Selection Evolution

ISSN: 1297-9686