Skip to main content

Table 3 Summary of significant windows identified by RHM using window sizes of 1000, 500 and 200 SNPs

From: Detection of genomic regions underlying resistance to gastrointestinal parasites in Australian sheep

Window #

OAR

Position (bp)

\({\text{h}}_{{g_{i} }}^{2}\) (SE)

LRT

−logP

FDR

  

Start

End

    

1000-SNP window analysis

       

 159

2

106479658

112388825

0.007 \(\left( {0.003} \right)\)

19.2

5.23

0.001

 160

2

109055156

115988999

0.007 \(\left( {0.004} \right)\)

17.2

4.76

0.003

 161

2

112409311

118712363

0.010 \(\left( {0.005} \right)\)

22.6

5.99

0.001

 412

6

32700889

37820042

0.009 \(\left( {0.004} \right)\)

20.0

5.40

0.001

 413

6

35275766

40133729

0.010 \(\left( {0.004} \right)\)

24.8

6.49

0.000

 414

6

37828214

42360019

0.007 \(\left( {0.004} \right)\)

13.6

3.93

0.019

500-SNP window analysis

       

 318

2

106479658

109049182

0.006 \(\left( {0.003} \right)\)

16.7

4.66

0.006

 319

2

107706511

110358002

0.007 \(\left( {0.004} \right)\)

13.6

3.93

0.021

 320

2

109055156

112388825

0.007 \(\left( {0.004} \right)\)

15.9

4.46

0.009

 321

2

110360839

114468943

0.006 \(\left( {0.003} \right)\)

17.0

4.71

0.006

 322

2

112409311

115988999

0.007 \(\left( {0.004} \right)\)

14.7

4.19

0.013

 323

2

114470485

117276436

0.012 \(\left( {0.007} \right)\)

18.3

5.02

0.004

 324

2

115995299

118712363

0.008 \(\left( {0.004} \right)\)

18.9

5.17

0.003

 325

2

117294302

119911849

0.006 \(\left( {0.003} \right)\)

15.0

4.26

0.012

 830

6

34069188

36548480

0.007 \(\left( {0.004} \right)\)

13.1

3.82

0.025

 831

6

35275766

37820042

0.009 \(\left( {0.005} \right)\)

21.0

5.64

0.002

 832

6

36552018

38994028

0.007 \(\left( {0.003} \right)\)

23.2

6.14

0.001

 833

6

37828214

40133729

0.008 \(\left( {0.004} \right)\)

19.0

5.18

0.003

200-SNP window analysis

       

 798

2

106987063

107924749

0.005 \(\left( {0.003} \right)\)

13.13

3.83

0.051

 799

2

107447474

108441185

0.007 \(\left( {0.003} \right)\)

18.8

5.14

0.007

 804

2

110107622

111043903

0.007 \(\left( {0.004} \right)\)

13.6

3.95

0.048

 805

2

110590464

112388825

0.006 \(\left( {0.003} \right)\)

20.2

5.46

0.005

 806

2

111047822

113380103

0.006 \(\left( {0.004} \right)\)

13.1

3.82

0.055

 814

2

117019488

118134501

0.007 \(\left( {0.004} \right)\)

17.5

4.83

0.009

 2088

6

35275766

36251932

0.005 \(\left( {0.003} \right)\)

13.6

3.95

0.047

 2089

6

35743335

36802158

0.005 \(\left( {0.003} \right)\)

13.5

3.95

0.047

 2090

6

36252650

37275709

0.005 \(\left( {0.003} \right)\)

15.0

4.27

0.030

 2091

6

36805051

37820042

0.010 \(\left( {0.006} \right)\)

22.4

5.94

0.003

 2092

6

37286366

38279284

0.008 \(\left( {0.004} \right)\)

24.6

6.45

0.002

 2093

6

37828214

38766020

0.006 \(\left( {0.003} \right)\)

19.8

5.36

0.005

 4122

18

17645871

18425906

0.007 \(\left( {0.003} \right)\)

17.8

4.91

0.009

 4123

18

18057085

18957804

0.005 \(\left( {0.003} \right)\)

13.2

3.84

0.051

 4879

24

40476812

41995998

0.008 \(\left( {0.004} \right)\)

18.3

5.02

0.008

  1. \({\text{h}}_{{g_{i} }}^{2}\): regional genomic heritability; SE: standard error; -logP: \(- { \log }_{10} \left( {{\text{p}} - {\text{value}}} \right)\)
  2. Significant windows were selected at a FDR of 5%