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Table 5 RHM analysis conditioned on adding the top SNPs from GWAS to the model sequentially

From: Detection of genomic regions underlying resistance to gastrointestinal parasites in Australian sheep

Scenario

\({\mathbf{GRM}}_{i}\) (SE)

\({\mathbf{GRM}}_{c}\) (SE)

Logl

LRT

No condition

0.030 (0.008)

0.16 (0.02)

− 10644

–

Cond. on S1

0.028 (0.008)

0.16 (0.02)

− 10643

2

Cond. on S1 + S2

0.026 (0.007)

0.16 (0.02)

− 10642

4

Cond. on S1 + S2 + S3

0.026 (0.007)

0.16 (0.02)

− 10644

0

Cond. on S1 + S2 + S3 + S4

0.023 (0.007)

0.16 (0.02)

− 10641

6

Cond. on S1 + S2 + S3 + S4 + S5

0.020 (0.006)

0.16 (0.02)

− 10637

14

Cond. on S1 + S2 + S3 + S4 + S5 + S6

0.019 (0.006)

0.16 (0.02)

− 10636

16

  1. GRMi and GRMc as in Table 4
  2. S1: rs421630816; S2: rs424521894; S3: rs425769499; S4: rs416517011; S5: rs404837788; S6: rs413573644
  3. Logl: log likelihood
  4. SE: standard error
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