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Fig. 4 | Genetics Selection Evolution

Fig. 4

From: Muscle glycogen level and occurrence of acid meat in commercial hybrid pigs are regulated by two low-frequency causal variants with large effects and multiple common variants with small effects

Fig. 4

Uncovering other potential loci for RG level and evaluating their effects. a Manhattans plot of the conditional GWAS when adjusting for two pinpointed causal variants (PRKAG3 R200Q and PHKG1g.8283C>A) in the model. One top SNP rs81347579 that is currently assigned to “chromosome unknown” and another SNP rs319599168 on SSC4 that were identified in the earlier GWAS (Figs. 1a, 2a) are still significantly associated with RG level. b The main-effects of the three top SNPs (PRKAG3 R200Q, rs81347579 and rs319599168) and their two-way interaction effects on RG level

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