Table 1 Top 10 variants for each significant quantitative trait locus detected in the genome-wide association analysis for proportion of white spotting
Variant reference ID | Genomic position | Effect size (%)a | Standard error | p-value | |
|---|---|---|---|---|---|
Chromosome 22 | |||||
1 | rs209784468 | Chr22 g.31769747A>G | 11.52 | 0.129 | 1.83 × 10−79 |
2 | rs461193589 | Chr22 g.31783093T>C | 11.35 | 0.129 | 8.67 × 10−79 |
3 | rs456585934 | Chr22 g.31888569A>G | 11.43 | 0.13 | 1.21 × 10−78 |
4 | rs209274730 | Chr22 g.32386542A>C | 11.06 | 0.129 | 1.38 × 10−77 |
5 | rs480312583 | Chr22 g.31958551G>A | 11.2 | 0.13 | 2.47 × 10−77 |
6 | NA | Chr22 g.31768931A>T | 10.88 | 0.129 | 6.11 × 10−77 |
7 | rs208958980 | Chr22 g.31769772T>C | 10.84 | 0.129 | 1.59 × 10−76 |
8 | rs433645096 | Chr22 g.31768933A>T | 10.84 | 0.129 | 1.59 × 10−76 |
9 | NA | Chr22 g.31768928TG>T | 10.82 | 0.129 | 2.29 × 10−76 |
10 | rs209837244 | Chr22 g.32369667G>A | 10.94 | 0.129 | 2.57 × 10−76 |
Chromosome 6 | |||||
1 | rs451683615 | Chr6 g.64210286A>G | 12.86 | 0.15 | 1.10 × 10−64 |
2 | rs463810013 | Chr6 g.71722665C>T | 12.27 | 0.152 | 6.37 × 10−61 |
3 | rs109512689 | Chr6 g.71873479T>C | 12.02 | 0.151 | 8.08 × 10−61 |
4 | rs385773341 | Chr6 g.71873455A>C | 12.02 | 0.151 | 8.08 × 10−61 |
5 | rs474403670 | Chr6 g.71698814A>G | 12.22 | 0.152 | 8.99 × 10−61 |
6 | rs208251862 | Chr6 g.71692344C>A | 10.62 | 0.146 | 7.05 × 10−59 |
7 | rs43469863 | Chr6 g.79629052T>C | 7.76 | 0.139 | 7.47 × 10−49 |
8 | rs43469866 | Chr6 g.79631054T>C | 7.69 | 0.139 | 1.34 × 10−48 |
9 | rs43764915 | Chr6 g.79649488A>G | 7.54 | 0.139 | 9.51 × 10−48 |
10 | rs208257925 | Chr6 g.79640038G>A | 7.48 | 0.139 | 1.90 × 10−47 |
Chromosome 2 | |||||
1 | rs109979909 | Chr2 g.111576221A>C | 3.19 | 0.157 | 1.27 × 10−13 |
2 | NA | Chr2 g.111588505GA>G | 3.19 | 0.157 | 1.40 × 10−13 |
3 | rs379031581 | Chr2 g.111587292A>G | 3.19 | 0.157 | 1.40 × 10−13 |
4 | rs385337886 | Chr2 g.111573853A>G | 3.19 | 0.157 | 1.40 × 10−13 |
5 | rs468881264 | Chr2 g.111615661G>A | 3.19 | 0.157 | 1.40 × 10−13 |
6 | NA | Chr2 g.111601410A>G | 3.18 | 0.156 | 1.41 × 10−13 |
7 | rs381689348 | Chr2 g.111604662A>C | 3.18 | 0.156 | 1.41 × 10−13 |
8 | rs377769439 | Chr2 g.111634835G>A | 3.18 | 0.157 | 1.55 × 10−13 |
9 | rs385963805 | Chr2 g.111570788G>A | 3.18 | 0.157 | 1.55 × 10−13 |
10 | rs380782402 | Chr2 g.111560710G>A | 3.17 | 0.156 | 1.58 × 10−13 |