Fig. 3

Genome-wide selection signals identified in Tibetan Cashmere goats. a Distribution of log₂(θ_π ratios) and F_ST values calculated in 10-kb sliding windows between TC and Bezoar ibex. The data points in red (corresponding to the top 5% of the empirical distribution) indicate the signatures of selection in TC. b Manhattan plot of iHH12 across all 29 autosomes with different colors in TC. The iHH12 values were calculated in 10-kb sliding windows. c Distribution of log₂(θ_π ratios) and F_ST values calculated in 10-kb sliding windows between TC and the lowland group of goat breeds (including CB, JT, MD, and MN). d Venn diagram for the positively selected genes identified in TC from two different comparisons (i.e., TC versus Bezoar ibex and TC versus the four lowland breeds (CB, JT, MD, and MN)