Table 1 Variant counts for masked genotypes of 307 testing individuals used in this analysis before and after filtering
From: A multi-breed reference panel and additional rare variants maximize imputation accuracy in cattle
Assay | Starting assay density | Filtered density |
|---|---|---|
GGP-ULD | 8672 | 6394 |
GGP-LD | 26,504 | 16,854 |
SNP50 | 58,336 | 44,366 |
GGP-90KT | 76,999 | 70,581 |
GGP-HD | 139,977 | 125,446 |
GGP-F250 | 227,234 | 201,236 |
HD | 777,962 | 753,715 |