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Table 4 The mean IQS by MAF for HD-specific markers that were imperfectly imputed using the “two-round” method

From: A multi-breed reference panel and additional rare variants maximize imputation accuracy in cattle

MAF

Number of SNPs

Two-round IQS

One-round IQS

IQS change

> 0.00–0.05

11,788

0.5453

0.6299

0.0846

> 0.05–0.10

18,095

0.9221

0.9330

0.0109

> 0.10–0.15

23,311

0.9724

0.9742

0.0017

> 0.15–0.20

29,222

0.9772

0.9784

0.0012

> 0.20–0.25

34,062

0.9803

0.9812

0.0009

> 0.25–0.30

39,948

0.9807

0.9815

0.0009

> 0.30–0.35

44,309

0.9815

0.9824

0.0009

> 0.35–0.40

47,657

0.9814

0.9822

0.0008

> 0.40–0.45

49,233

0.9815

0.9823

0.0008

> 0.45–0.50

50,908

0.9816

0.9823

0.0007