From: A multi-breed reference panel and additional rare variants maximize imputation accuracy in cattle
MAF | Number of SNPs | Two-round IQS | One-round IQS | IQS change |
---|---|---|---|---|
> 0.00–0.05 | 11,788 | 0.5453 | 0.6299 | 0.0846 |
> 0.05–0.10 | 18,095 | 0.9221 | 0.9330 | 0.0109 |
> 0.10–0.15 | 23,311 | 0.9724 | 0.9742 | 0.0017 |
> 0.15–0.20 | 29,222 | 0.9772 | 0.9784 | 0.0012 |
> 0.20–0.25 | 34,062 | 0.9803 | 0.9812 | 0.0009 |
> 0.25–0.30 | 39,948 | 0.9807 | 0.9815 | 0.0009 |
> 0.30–0.35 | 44,309 | 0.9815 | 0.9824 | 0.0009 |
> 0.35–0.40 | 47,657 | 0.9814 | 0.9822 | 0.0008 |
> 0.40–0.45 | 49,233 | 0.9815 | 0.9823 | 0.0008 |
> 0.45–0.50 | 50,908 | 0.9816 | 0.9823 | 0.0007 |