Table 7 Per-individual r mean and standard deviation values for 850 K imputation based on starting assay density
From: A multi-breed reference panel and additional rare variants maximize imputation accuracy in cattle
Starting assay | Starting density | Mean r | SD r |
|---|---|---|---|
ULD | 6394 | 0.989 | 0.6070 |
GGP-LD | 16,854 | 0.995 | 0.0486 |
SNP50 | 44,366 | 0.997 | 0.0314 |
GGP-90KT | 70,581 | 0.998 | 0.0205 |
GGP-HD | 125,446 | 0.999 | 0.0129 |