Table 4 Functional annotations of variants with significant effects (−log10(P) ≥ 6) located within confidence intervals of the QTL
Functional annotation | Normande 0/1 | Holstein 0/1 | Holstein 0/1/2 | Total distinct |
|---|---|---|---|---|
Intergenic | 26 | 1189 | 930 | 1384 |
Intronic | 11 | 232 | 218 | 303 |
Upstream | 2 | 34 | 126 | 130 |
Downstream | 0 | 8 | 24 | 26 |
3′ UTR | 0 | 2 | 5 | 5 |
5′ UTR | 0 | 0 | 2 | 2 |
Synonymous | 1 | 1 | 8 | 9 |
Missense | 0 | 1 | 9 | 9 |
Total | 40 | 1467 | 1322 | 1868 |